Jatropha Genome Database

JcCB0549541.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0549541.10 - phase: 0 /pseudo
         (1252 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004547 ornithine decarboxylase, putative                       180   1e-44

>29929.m004547 ornithine decarboxylase, putative
          Length = 612

 Score =  180 bits (91), Expect = 1e-44
 Identities = 343/427 (80%)
 Strand = Plus / Plus

                                                                       
Query: 44  gcctcaaagccatatcggaggctagcaggttgaaaggccaacaagttgttcaaattcaaa 103
           ||||||||| |||||  |||||||||||| ||||||  ||| ||| |||| || ||| ||
Sbjct: 47  gcctcaaagtcatattagaggctagcagggtgaaagatcaagaagctgttgaagttccaa 106

                                                                       
Query: 104 aggctgccctctatagtcttataaagtctatctctgataatcaagaagaagctgagccct 163
             | | ||||  |||||||||  | ||| || ||||| ||||||||||| || || ||||
Sbjct: 107 gaggttccctgaatagtcttaatatgtccatttctgagaatcaagaagaggcggaaccct 166

                                                                       
Query: 164 tttatcttattgatttaggggttgttataagactaatggataaatggaatcaatctctac 223
           ||||| || | ||| |||||||||| ||||| ||  |||| ||||||| |||    ||||
Sbjct: 167 tttatattctcgatataggggttgtcataagcctcgtggagaaatggagtcatcacctac 226

                                                                       
Query: 224 caaatgtaaaacctttttatgctgttaaatgcaatactgagcctgcattacttctatcac 283
           |  |||| ||||| ||||||||||| ||| |||||| |||| ||||||| ||| |    |
Sbjct: 227 cccatgttaaacccttttatgctgtcaaacgcaataatgagtctgcattgcttattgttc 286

                                                                       
Query: 284 ttgcaacacttggtgcaaactttgactgtgcaagtcaagctgagattgaaaccatccttg 343
           ||||||||||||||||||||||||||||||| ||||| |||||||||||  | ||  | |
Sbjct: 287 ttgcaacacttggtgcaaactttgactgtgctagtcaggctgagattgaggcaattttgg 346

                                                                       
Query: 344 gcctcggtgttaatcctgacaggattgtgtatgccaatccatgcaagtctgcgtcccata 403
           |||| ||| ||| |||||| |||||| | ||||||||||||||||||  ||  |||||||
Sbjct: 347 gccttggtattagtcctgataggattctttatgccaatccatgcaagagtgtctcccata 406

                                                                       
Query: 404 taaaatatgcagctagggttggagtcaacctgacaacctttgattccaagcaagaaattg 463
           | || || ||||| || || |||||  |||||||||| |||||||||||| ||||| |||
Sbjct: 407 tcaagtacgcagccagagtcggagtatacctgacaacttttgattccaaggaagaagttg 466

                  
Query: 464 ataagat 470
           | |||||
Sbjct: 467 acaagat 473