Jatropha Genome Database

JcCB0545081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0545081.10 + phase: 0 
         (684 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006223 TRANSPORT INHIBITOR RESPONSE 1 protein, putative        331   3e-90

>29908.m006223 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 1908

 Score =  331 bits (167), Expect = 3e-90
 Identities = 398/475 (83%)
 Strand = Plus / Plus

                                                                       
Query: 194 tacccgaataccaagctccttatcctgaccaggttcttgaaaatgtcctcgagaatgttc 253
           ||||||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||
Sbjct: 170 tacccgactaccaagctccataccctgaccaggttcttgaaaatgtgctcgaaaacgttc 229

                                                                       
Query: 254 tctgcttcttgacctcacgccgggacagaaacgctgcctcattggtctgtaggtcttggt 313
           |||| |||||||| ||||| || ||||||||||| || ||||||||||| | ||| ||||
Sbjct: 230 tctgtttcttgacttcacggcgagacagaaacgcagcgtcattggtctgcaagtcatggt 289

                                                                       
Query: 314 atcgtgtggaggcgcttacacgatccgagctcttcatcgggaattgttatgcagtctctc 373
           | ||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |||||| 
Sbjct: 290 accgtgtggaggcacttacccgatccgaactctttatcgggaactgctatgcggtctcta 349

                                                                       
Query: 374 cacaacgcgctacggcgcggtttgctcgaatccggtccctgacattgaagggcaagcccc 433
           |   ||| |||||    |||||| | ||||||  |||  | || || ||||| |||||||
Sbjct: 350 cgagacgggctacttgccggtttacccgaatcaagtcggttactttaaagggtaagcccc 409

                                                                       
Query: 434 ggttcgctgatttcaaccttatgcctcctcgatggggggctcactttgcgccatgggttt 493
           |||| || |||||||| |||||||||||    |||||||||||||||||||| |||||| 
Sbjct: 410 ggtttgcagatttcaatcttatgcctccaaattggggggctcactttgcgccttgggtta 469

                                                                       
Query: 494 cttctatggcaaaggcatacccttggctcgagaaggttcacttgaagcggatgaccgtga 553
           || |||||| ||||||||| |||||||| || || |||||||||||||| ||||| || |
Sbjct: 470 ctactatgggaaaggcatatccttggcttgaaaaagttcacttgaagcgtatgactgtta 529

                                                                       
Query: 554 cggatgatgatcttgcgctgcttgcggagtcatttttgggatttaaggagcttgtgctag 613
           | ||||||||||||||||| ||||| ||||| ||||  || ||||| ||||||||||| |
Sbjct: 530 ctgatgatgatcttgcgcttcttgccgagtctttttctgggtttaaagagcttgtgcttg 589

                                                                  
Query: 614 tgtgttgtgatgggtttggcactagtgggcttgctgtggttgctagtagatgcag 668
           | ||||||||||| ||||| |||||||| |||||| | |||||||| || |||||
Sbjct: 590 tttgttgtgatggctttggtactagtggacttgctattgttgctagcaggtgcag 644



 Score = 99.6 bits (50), Expect = 2e-20
 Identities = 82/92 (89%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                       
Query: 13  aaaaaacctagatcagatactgactctcaa---acccctaatttcatgagagaagatcga 69
           |||||||| |||||||| |  |||||||||   |||||||||||||||||||||||||| 
Sbjct: 16  aaaaaacccagatcagagagcgactctcaaccaacccctaatttcatgagagaagatcgt 75

                                           
Query: 70  actgaaatgtctgaagacgacaaccgatctcc 101
           || |||||||||||||||||| ||||||||||
Sbjct: 76  acagaaatgtctgaagacgacgaccgatctcc 107