Jatropha Genome Database

JcCB0536281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0536281.10 + phase: 2 /partial
         (469 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004627 conserved hypothetical protein                          349   9e-96

>29848.m004627 conserved hypothetical protein
          Length = 1281

 Score =  349 bits (176), Expect = 9e-96
 Identities = 254/280 (90%)
 Strand = Plus / Plus

                                                                       
Query: 129 taagtcccactgcagaagattctaaacctcgcagggtgggtgcacttccaaattatggtt 188
           |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct: 581 taagtcccactgcagaagatgccaaacctcgcagggtggctgcacttccaaattatggtt 640

                                                                       
Query: 189 ttagcttcaagtgtgatgagcgagctgagaaaaggagagagttctactccaaacttgagg 248
           ||||||||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct: 641 ttagcttcaagtgcgatgaacgtgctgagaaaaggagagagttttactctaaacttgagg 700

                                                                       
Query: 249 aaaagattcatgcaaaggaagtagaaaagaatacattacaagcaaagtccaaggaaactc 308
           | ||||||||||| |||||  |||||| |||||  || |||||||||||||||||||| |
Sbjct: 701 agaagattcatgcgaaggagctagaaatgaataacttgcaagcaaagtccaaggaaaccc 760

                                                                       
Query: 309 aagaagctgagatcaagatgctcaggaagagtttgaactttaaagcaacaccaatgccta 368
           |||||||||||||||||||||||||||||||||||   ||||| |||||||| ||||| |
Sbjct: 761 aagaagctgagatcaagatgctcaggaagagtttggcatttaaggcaacacctatgccca 820

                                                   
Query: 369 gcttctatcaagaacctccaccacctaagctggaactaaa 408
           ||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 821 gcttctatcaagagcctccaccgcctaagatggaactaaa 860



 Score = 73.8 bits (37), Expect = 8e-13
 Identities = 107/129 (82%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaatggctcagttacatcaaattcacaggctaaaacagactttcaaaagcatatcatt 60
           |||||||| |||| ||| |||||||||||  | ||||||| | || ||||||| ||||||
Sbjct: 388 tcaaatggttcagctacctcaaattcacaatc-aaaacagcccttgaaaagcaaatcatt 446

                                                                       
Query: 61  taatgagaggcaagttcaggcatcaaagcaatctgggaagtctgatgtggcatcctctga 120
            | ||| ||||  |||||| || |||||||  ||| ||||| ||||||| ||||||||||
Sbjct: 447 cagtgaaaggctggttcagacagcaaagcatcctgcgaagtgtgatgtgacatcctctga 506

                    
Query: 121 aggcctcat 129
           |||||||||
Sbjct: 507 aggcctcat 515