Jatropha Genome Database

JcCB0533111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0533111.10 + phase: 0 /partial
         (318 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                           90   9e-18

>27810.m000636 conserved hypothetical protein
          Length = 3165

 Score = 89.7 bits (45), Expect = 9e-18
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 38  aggatggatttgagttgccttcacgcctctcagtatctgctgctgattgtattttagcta 97
           ||||||| ||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 575 aggatggctttgagttgccctctcgcctctcagtatctgctgctgattgcatattagcta 634

                        
Query: 98  tcactgaagcatt 110
           ||| ||| |||||
Sbjct: 635 tcagtgaggcatt 647



 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                       
Query: 228 taaatcatcagaagagtcaacctttgacatggcatacttgctttgggacttgatagggga 287
           |||||||| ||| || ||||  ||||||||||||| |||||||||||||||||||  |||
Sbjct: 744 taaatcattagatgactcaaattttgacatggcattcttgctttgggacttgataaagga 803

                                          
Query: 288 acttattactctaacacagagactgcttgct 318
            ||||||||||||   |||||||| ||||||
Sbjct: 804 gcttattactctagtgcagagactccttgct 834