Jatropha Genome Database

JcCB0528831.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0528831.10 - phase: 1 /partial
         (691 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29820.m001006 breast cancer type 2 susceptibility protein brca2,...   281   3e-75

>29820.m001006 breast cancer type 2 susceptibility protein brca2,
            putative
          Length = 3471

 Score =  281 bits (142), Expect = 3e-75
 Identities = 340/406 (83%)
 Strand = Plus / Plus

                                                                        
Query: 286  agctatcaaatgcagtgactccaaacttgttgcaatctgaactacataattccacgccga 345
            ||||||||||||  || | |||||||||||||||||||||| ||||||||||||   | |
Sbjct: 617  agctatcaaatgtggtcaatccaaacttgttgcaatctgaagtacataattccataacca 676

                                                                        
Query: 346  aaccacctccaatcaaattccacactgcaggtggaagatccttatctgtttccagtgatg 405
            |||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 677  aaccaccttcaatcaaattccacaccgcaggtggcagatccttatcagtttccagtgatg 736

                                                                        
Query: 406  cattggaacgtgcaaagagtcttcttggtgacccggacttgggaactttcttaaatgagg 465
            ||||| |||||||||| || |||||||||||||| |||||||| | ||||||||||||||
Sbjct: 737  cattgaaacgtgcaaaaagccttcttggtgacccagacttgggtaatttcttaaatgagg 796

                                                                        
Query: 466  atgatgcagttgatccagctcatacagtttccaaagtatgtagactcagtgatgcttcag 525
            | ||||  ||||||||||| | | |||||| ||| |    |||||| | |||| ||||| 
Sbjct: 797  aggatgtggttgatccagccctttcagttttcaatgagaatagacttaatgatacttcat 856

                                                                        
Query: 526  ttatgagggaagcaaattttcactctgcttttacttatccatgtgctgcaaagagcaagc 585
              |  | |||| || |||||| |||| |||||||||||||| |   ||||||||||||| 
Sbjct: 857  ccaccaaggaaacagattttcgctctacttttacttatccaggaattgcaaagagcaagt 916

                                                                        
Query: 586  atattggaaaaagcttcgtatctcctctcaaatcatcttcaaaccaagttctgtcatcct 645
            | ||   ||||   ||| |||| ||||| |||||||||||| ||||||||| ||| ||||
Sbjct: 917  acatctcaaaagttttcatatcccctcttaaatcatcttcacaccaagttcagtcttcct 976

                                                          
Query: 646  tcaattcagaaaatattatttcaggaattagcttgatcaagaaatt 691
            ||||||||||||||  |||||||||| |||| ||||||||||||||
Sbjct: 977  tcaattcagaaaatgctatttcaggagttagtttgatcaagaaatt 1022



 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 86/99 (86%)
 Strand = Plus / Plus

                                                                       
Query: 29  tggattcaccaactccctcttctctactgggtctgggaaatcggttaatatatcttcagc 88
           |||||||||| |||||||||| | ||||||||||||||| || |||||| ||||||| ||
Sbjct: 333 tggattcacccactccctcttttgtactgggtctgggaagtcagttaatgtatcttctgc 392

                                                  
Query: 89  tggtttggtcagagccaagacattattaggcttggaaaa 127
            ||  ||||||||||||||||||| || || ||||||||
Sbjct: 393 aggcctggtcagagccaagacattgttgggtttggaaaa 431