Jatropha Genome Database

JcCB0517161.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0517161.20 + phase: 0 /partial
         (652 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002002 pentatricopeptide repeat-containing protein, putative   214   5e-55

>29648.m002002 pentatricopeptide repeat-containing protein, putative
          Length = 1326

 Score =  214 bits (108), Expect = 5e-55
 Identities = 414/516 (80%)
 Strand = Plus / Plus

                                                                       
Query: 137 atttaatctccgatgttttccgatcaattccaagattcttctttcaatcaacgcgctcca 196
           ||||||||||||| ||  || |||| || ||||||||||| || |||||||| |||||  
Sbjct: 119 atttaatctccgacgtcctcagatccatcccaagattctttttccaatcaacacgctcag 178

                                                                       
Query: 197 ttggccgccagaacactacccgccaccgctctccgttaaaacagcgcaacctcaagcaag 256
           | |||||||| | ||| ||||| ||||||||||| || ||||| |||| ||| || ||||
Sbjct: 179 tcggccgccaaagcacaacccgtcaccgctctcctttgaaacaacgcagcctaaaacaag 238

                                                                       
Query: 257 aatcctgcaaataccgtgacaaagtgttagttcttggcccagctgcttatagagaccaca 316
           |  ||  |||| |   | ||||| |  |  ||||||| |||||||||||||  ||||  |
Sbjct: 239 agacccacaaacataataacaaacttctcattcttggtccagctgcttataaggacccaa 298

                                                                       
Query: 317 aaagggtcaatgtaggcttaaacaaagcaatggagttcttctattggttagaaactcatt 376
           |||| || ||  ||||  |   |||||||||||||||||| |||||| |||| ||| |||
Sbjct: 299 aaagagttaaattaggagtgttcaaagcaatggagttcttttattgggtagagactaatt 358

                                                                       
Query: 377 ttagctttgcacatactgaaatgacttgtagagagatggcttgcgttttggctagaggga 436
            |  ||||  ||| || ||||  ||||||||||| |||| ||  ||||||||||||| ||
Sbjct: 359 gtgactttatacacaccgaaagcacttgtagagaaatgggttttgttttggctagagcga 418

                                                                       
Query: 437 atagactagacaagctgtggcaatttcttaaagatatgggaagaagagaaaatggtgttg 496
           |||||||||| ||||| ||| | |||||| |||| |||| || ||||||   |  || ||
Sbjct: 419 atagactagataagctctggaattttcttcaagaaatggcaaaaagagaggtttttgatg 478

                                                                       
Query: 497 gtgtaaaacttgttactactaataccattacctgtttgataaaagtcctaggagaagaag 556
           ||  ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 479 gtagaaaacttgttactactaatgctgttacctgtttgataaaagtcctaggagaagaag 538

                                                                       
Query: 557 ggctagtcaatcaggcattggctttgttttacagaatgaagcagtaccattgtaaaccgg 616
           |  | |||||  | || ||  |||||||||| ||||||||| |||| ||||||||||| |
Sbjct: 539 gattggtcaaagaagctttatctttgttttatagaatgaagaagtatcattgtaaacctg 598

                                               
Query: 617 atgtgtatgcttataatacaattattaatgctcttt 652
           ||||||||||||||||||| |||||| |||||||||
Sbjct: 599 atgtgtatgcttataatactattatttatgctcttt 634