Jatropha Genome Database

JcCB0508071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0508071.10 + phase: 0 /partial
         (410 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29827.m002590 conserved hypothetical protein                          210   5e-54
29827.m002591 DNA binding protein, putative                            58   4e-08

>29827.m002590 conserved hypothetical protein
          Length = 696

 Score =  210 bits (106), Expect = 5e-54
 Identities = 118/122 (96%)
 Strand = Plus / Plus

                                                                       
Query: 285 cctgaaattgatatatcggaacttgaaagcttgttctcagctgcttctgcttcagatggg 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 19  cctgaaattgatatatcagaactcgaaagcttgttctcggctgcttctgcttctgatggg 78

                                                                       
Query: 345 agtggcagtaataaagctggaggtcgacgtggttctaacattaacaaacctgagaaagtg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  agtggcagtaataaagctggaggtcgacgtggttctaacattaacaaacctgagaaagtg 138

             
Query: 405 ca 406
           ||
Sbjct: 139 ca 140


>29827.m002591 DNA binding protein, putative
          Length = 2463

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                        
Query: 83   ctaatgtgccacctccaccacctccatctattggaagagcaagaccttcttcaggttcag 142
            |||||| |||||| || ||||||||||| |||||||  | || ||||||||||||  || 
Sbjct: 2327 ctaatgcgccaccacccccacctccatccattggaaagggaaaaccttcttcagggccaa 2386

                             
Query: 143  ttggtcaaggaagaggt 159
            ||||||| |||||||||
Sbjct: 2387 ttggtcatggaagaggt 2403