Jatropha Genome Database

JcCB0498951.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0498951.10 + phase: 0 /pseudo/partial
         (709 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29864.m001501 9-cis-epoxycarotenoid dioxygenase, putative             165   4e-40

>29864.m001501 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 1611

 Score =  165 bits (83), Expect = 4e-40
 Identities = 209/251 (83%)
 Strand = Plus / Plus

                                                                       
Query: 16  atagtggaggtgaatccaaagccgaacaaaggactgacttcaaagcttgttgactacttg 75
           |||||||| |||||||||  ||| |  |||||||| ||||| ||| || |||||| ||||
Sbjct: 43  atagtggaagtgaatccatcgccaagaaaaggactcacttctaaggttattgacttcttg 102

                                                                       
Query: 76  gagaagctgatcgtcaaattaatgtttgataaatcccagcctctccattatctcaacggt 135
           || |||||||| || |||||||||  ||||   || || ||||| |||||||||  ||||
Sbjct: 103 gaaaagctgatagtgaaattaatgcatgatccttctcaacctcttcattatctctccggt 162

                                                                       
Query: 136 aacttcgctcctgttcccgaagctcctccggttaaagaccttcctgtcataggccacctt 195
           || ||||||||||||   ||| ||||||| ||||  ||||||||||| | ||| ||||||
Sbjct: 163 aatttcgctcctgttgatgaaactcctcctgttactgaccttcctgttaaaggtcacctt 222

                                                                       
Query: 196 cctgaatgcttgaatggggagtttgtgagggtaggtcctaatccaaagtttgctcctgtg 255
           ||||||||| ||||||| |||||||| || ||||| || |||||||||||| ||||||||
Sbjct: 223 cctgaatgcatgaatggcgagtttgtaagagtaggaccaaatccaaagttttctcctgtg 282

                      
Query: 256 gctggatatca 266
           |||||||||||
Sbjct: 283 gctggatatca 293



 Score =  163 bits (82), Expect = 2e-39
 Identities = 145/166 (87%)
 Strand = Plus / Plus

                                                                       
Query: 529 atgtagttaaagttatggaagatggagatttacaaactgttggcttgctggattatgaca 588
           |||| |||||||||||||||||||||||| ||||||| || ||| | |||||||||||||
Sbjct: 563 atgtggttaaagttatggaagatggagatctacaaaccgtcggcctactggattatgaca 622

                                                                       
Query: 589 agagacttaagcactccttcactgctcatccaaaggttgatccattcactggagagatgt 648
           |||||||||| || || || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 agagacttaaacattcatttactgctcatccaaaggttgatccattcacaggagagatgt 682

                                                         
Query: 649 ttacatttggttatgctcatgaacccccatacgtcacttacagagt 694
           | || ||||| ||||  ||||||   |||||| |||| ||||||||
Sbjct: 683 tcacctttggctatgggcatgaaaagccatacatcacgtacagagt 728



 Score =  153 bits (77), Expect = 2e-36
 Identities = 92/97 (94%)
 Strand = Plus / Plus

                                                                       
Query: 270 atggaaaggcaacatatgttcgtcgctatgtggagacatcacgacttaagcaagaagagt 329
           |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct: 323 atggaaaggcaacatatgttcgtcgctatgtgaagacatcacgtcttaaacaagaagagt 382

                                                
Query: 330 tttttggaggcgccaaatttatgaagataggtgatct 366
           ||||||||||| ||||||||||||||||||| |||||
Sbjct: 383 tttttggaggctccaaatttatgaagataggagatct 419