Jatropha Genome Database

JcCB0496561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0496561.10 + phase: 2 /partial
         (313 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29603.m000509 Ethylene-responsive transcription factor, putative      109   1e-23
27446.m000475 DNA binding protein, putative                            52   2e-06

>29603.m000509 Ethylene-responsive transcription factor, putative
          Length = 456

 Score =  109 bits (55), Expect = 1e-23
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaacatttgacaccgcagaggaggcggcgcgtgcttatgatagagctgcatttagcat 60
           |||||||||||| ||||| |||||||| || ||||| ||||||||||| ||||||  | |
Sbjct: 126 aggaacatttgataccgcggaggaggctgctcgtgcatatgatagagcagcatttcactt 185

                                                          
Query: 61  gagaggtcatcttgcaatccttaattttcctaatgaatattattctc 107
           ||||||||||||||||| ||||||||| |||||||| ||||| ||||
Sbjct: 186 gagaggtcatcttgcaacccttaatttccctaatgagtattactctc 232



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                       
Query: 223 gcaagtgtttgagttcgagtatttagatgatacggtcttggaggagcttcttgaatcaga 282
           |||||| |||||||| |||||| | ||||| |   |||||||||||||||||| ||||||
Sbjct: 366 gcaagtttttgagtttgagtatctggatgacaaactcttggaggagcttcttgcatcaga 425

                    
Query: 283 ggaggagaa 291
            ||||||||
Sbjct: 426 agaggagaa 434


>27446.m000475 DNA binding protein, putative
          Length = 864

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 1   aggaacatttgacaccgcagaggaggcggcgcgtgcttatga 42
           |||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 540 aggaacgttcgacacagcagaggaggcggcgcgtgcatatga 581