Jatropha Genome Database

JcCB0488391.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0488391.10 - phase: 0 /partial
         (334 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013992 structural constituent of ribosome, putative            188   1e-47

>30147.m013992 structural constituent of ribosome, putative
          Length = 492

 Score =  188 bits (95), Expect = 1e-47
 Identities = 191/223 (85%)
 Strand = Plus / Plus

                                                                       
Query: 94  aaccctctcgaggagttctttgaagcagatagaagccaggatgaggacaacaaaattttc 153
           |||||||| ||||||||||| || |||||||| || ||||||||||  ||     || ||
Sbjct: 103 aaccctcttgaggagttcttcgaggcagataggagtcaggatgaggctaaacctgttgtc 162

                                                                       
Query: 154 tatggtcgaagttggaaagcttctgaactacgcctgaagtcttgggacgatcttcagaag 213
           ||||||||||||||||||||||||||  | ||||||||||||||||| |||||| | |||
Sbjct: 163 tatggtcgaagttggaaagcttctgagttgcgcctgaagtcttgggatgatcttaataag 222

                                                                       
Query: 214 ctatggtatgttatgttaaaggagaaaaacatgctgatgactcaacgccagatgcttcat 273
           |||||||||||| |  | |||||||| |||||| ||||||||||||||||||||||||| 
Sbjct: 223 ctatggtatgttctactgaaggagaagaacatgttgatgactcaacgccagatgcttcac 282

                                                      
Query: 274 gctcagaacctaaggtttccaaatccagagcgtttacctaagg 316
           || ||||||||| | ||||||||||| ||||| ||||| ||||
Sbjct: 283 gcccagaacctacgatttccaaatcctgagcgcttaccaaagg 325



 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                   
Query: 1  atgtttatgacaagatttattgggagaaccctcttttctgctgctaaatctgaaacc 57
          |||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct: 1  atgtttttgacaagatttatagggagaacactctttgctgctgctaaatctgaaacc 57