Jatropha Genome Database

JcCB0487041.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0487041.10 - phase: 0 /pseudo
         (386 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005416 conserved hypothetical protein                          220   5e-57

>29912.m005416 conserved hypothetical protein
          Length = 594

 Score =  220 bits (111), Expect = 5e-57
 Identities = 258/307 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagaagctagcgagaaattggcgaaaatctcatgaagagaagttatctctcccaact 60
           ||||||||||| |||||||||||| |||||||||  || ||||| | |||||| ||||||
Sbjct: 1   atgaagaagctggcgagaaattggagaaaatctcgagacgagaattcatctctaccaact 60

                                                                       
Query: 61  cgtgatgatccctctctcgatgattctcgtcccttggataccgaagaacaagaggagttg 120
            | || ||||| || || ||||||||||||||| |||| ||| |||| |||||||| |||
Sbjct: 61  tgggaagatccgtcgcttgatgattctcgtcccatggacacccaagagcaagaggaattg 120

                                                                       
Query: 121 gtccgatcgcttgaaaggacgcaagcagagcaatcccttttttggaggagagtgttcgcc 180
           || ||||| |||||||| ||||||||  | ||||| ||||| |||||||||||||| || 
Sbjct: 121 gttcgatctcttgaaagaacgcaagctcaacaatcacttttatggaggagagtgtttgct 180

                                                                       
Query: 181 ggatttcttttcagctatgctgtgtttcaactgtactccatttaccagatggcaacttct 240
           ||| |||| ||| |||| |||| ||||||| ||||||| || ||||||   |||||||||
Sbjct: 181 ggacttctcttctgctacgctgcgtttcaagtgtactcaatctaccagcaagcaacttct 240

                                                                       
Query: 241 ccatgggaactgaggtatcaggcttatttcatggaagatatggagtcgtggatggtaata 300
           ||||||||| |||||||||| ||||| |||||||| ||||||   || |||||||| |||
Sbjct: 241 ccatgggaattgaggtatcatgcttacttcatggaggatatgagttcttggatggttata 300

                  
Query: 301 tctgcag 307
           |||||||
Sbjct: 301 tctgcag 307