Jatropha Genome Database
- JcCB0477071.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0477071.10 + phase: 1 /partial
(695 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29848.m004540 DNA-directed RNA polymerase subunit, putative 634 0.0
>29848.m004540 DNA-directed RNA polymerase subunit, putative
Length = 3612
Score = 634 bits (320), Expect = 0.0
Identities = 551/628 (87%)
Strand = Plus / Plus
Query: 67 atggggaaaactgtggacttgtaaagaatttggccattactggacttgttagtacagaga 126
|||| ||||||||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct: 1640 atggtgaaaactgtggacttgtaaagaatttggccactactggacttgttagtgtaaaca 1699
Query: 127 tattggaacctctgattgacatattgtttgattgtggaatggacaaactggttgatgata 186
|||| |||||||| || |||| |||| ||| | |||||||||| ||| | ||| |||
Sbjct: 1700 tattagaacctctaatcgacaaattgattgctcgtggaatggagaaagttcctgaagatt 1759
Query: 187 cccatactaaactggatgagaagtataaagtattcctgaatggagaatgggttggagtct 246
||||| || | ||||| |||||| ||||||| || || ||||| |||||||||||||| |
Sbjct: 1760 cccattctgacctggacgagaaggataaagtgtttctcaatggggaatgggttggagttt 1819
Query: 247 gtgaagattctaatttgtttgtagctgagcttagacgtttgcggcggaggaagaaattac 306
||||||||||| |||||||| || ||||||||||| |||| ||||||||||| || |
Sbjct: 1820 gtgaagattctcgcttgtttgttgccgagcttagacgcctgcgacggaggaagaagttgc 1879
Query: 307 ctcgacaggtggaaatcaaaagagatgaacagcaaaaggaagtacggatatttgctgatg 366
||| |||||||||||||||||||||||||||||| | |||||||| |||||| ||||||
Sbjct: 1880 ctcagcaggtggaaatcaaaagagatgaacagcaacaagaagtacgcatattttctgatg 1939
Query: 367 ctggaaggattttacgtccccttttagttgttgagaatttacataaaataaaagcattta 426
|||||||||||||||| |||||||| |||||| ||||||||||||| ||| |||||||||
Sbjct: 1940 ctggaaggattttacgcccccttttggttgttcagaatttacataagatagaagcattta 1999
Query: 427 aagggggaaattacacctttcaatctcttctggacaagggaattattgagttcattggaa 486
|||||||||||| ||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct: 2000 aagggggaaattgtaccttccaatcacttctggacaagggaattattgagtttgtcggaa 2059
Query: 487 ctgaagaggaagaggactgcagcactgcatggggcatcaaatttcttgtagcaggagttg 546
||||||| |||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 2060 ctgaagaagaagaggactgcagcactgcatggggtatcaaatttcttttatcaggagttg 2119
Query: 547 ataaaaaacaacctttgaagtacacacactgtgaacttgatatgtcctttttattaggtt 606
|| || ||| | ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 2120 atgggaagcaatcgctgaagtacacacactgtgaacttgacatgtcctttttattaggat 2179
Query: 607 tgagttgtggaatcattccctttgccaatcatgaccatgcaagaagggtcctataccagg 666
|||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct: 2180 tgagttgtggaatcattcccttcgccaatcatgatcatgcaagaagagttctataccagg 2239
Query: 667 ctcaaaaacattctcagcaggctattgg 694
|||| |||||||||||||| ||||||||
Sbjct: 2240 ctcagaaacattctcagcaagctattgg 2267