Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (300 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002961 WD-repeat protein, putative                             200   3e-51

>29904.m002961 WD-repeat protein, putative
          Length = 2349

 Score =  200 bits (101), Expect = 3e-51
 Identities = 238/283 (84%), Gaps = 8/283 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgaaacattctaatccaatggattctgaaacatcacagccactgcttgatgctaggatgt 62
           ||||||||||||||||||||||||| |||||||||||||| || |||||  || ||||| 
Sbjct: 434 tgaaacattctaatccaatggattcggaaacatcacagcctctccttgactctcggatgc 493

                                                                       
Query: 63  gtctactaaaaccagcaaccaatcatcctggccagttggtccaaggaaattctggggagc 122
            |||||| ||||  ||||| |||||||||||||| ||||| |||||||||||| || |||
Sbjct: 494 ctctactgaaacaggcaacaaatcatcctggccaattggttcaaggaaattct-ggtagc 552

                                                                       
Query: 123 atttctgcagcactgcagcaaatccaggcacaaactcaacagactacctctgcaggacat 182
           |||  ||| |||||||| ||||||||||||| ||| |||||||||||        |||||
Sbjct: 553 attagtgcggcactgcaacaaatccaggcacgaacccaacagactac-------tgacat 605

                                                                       
Query: 183 caaaagtgaagtgaacttgggtacagctcagagatctttgcctacagacgcatcttcaat 242
           ||| |||||||||||||||||| | || || |||||||||||||  ||  | ||||| ||
Sbjct: 606 caagagtgaagtgaacttgggtgctgcgcaaagatctttgcctatggatccttcttccat 665

                                                      
Query: 243 ttatgggcacggaatcatgcagtccaaacctggaacaggaaat 285
           |||||| || |||||||||||||| |||||||||| |||||||
Sbjct: 666 ttatggccaaggaatcatgcagtcaaaacctggaataggaaat 708