Jatropha Genome Database
- JcCB0466931.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0466931.10 + phase: 0 /pseudo/partial
(1181 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27494.m000045 Auxin response factor, putative 640 0.0
30078.m002329 Auxin response factor, putative 214 9e-55
27538.m000327 Auxin response factor, putative 182 3e-45
>27494.m000045 Auxin response factor, putative
Length = 1773
Score = 640 bits (323), Expect = 0.0
Identities = 542/615 (88%)
Strand = Plus / Plus
Query: 22 aatggtaatggggatatgaaagggaaagtgagagctgagtctgttattcaggctgcaact 81
|||||||||||||||| || | ||||| || | |||||||||||||||||||||||||
Sbjct: 793 aatggtaatggggataataagagtaaagtaagggttgagtctgttattcaggctgcaact 852
Query: 82 cttgctgctaatggtcaaccttttgatgctgtttactatccaagagctagtactcctgag 141
||||| |||||||| || |||||||| |||||||||||||||||| |||||||| ||
Sbjct: 853 cttgcagctaatggccagccttttgagattgtttactatccaagagcaagtactccagaa 912
Query: 142 ttttgtgttaaggcctcggctgtgagggctgcaatgcagattcagtggtgtccagggatg 201
|||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 913 ttttgtgttagggcctcggcagtgagggccgcaatgcagattcagtggtgtcctgggatg 972
Query: 202 agattcaaaatggcttttgagacagaagattcatcccggattagttggtttatgggaaca 261
|| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 973 aggttcaaaatgccttttgagactgaggattcatcccggattagctggtttatgggaact 1032
Query: 262 atatcttctgttcaggttgcggatcctattcgttggcctagttctccatggcggcttcta 321
|||||||||||||||||||| ||||| || || ||||||| |||||| |||||||||||
Sbjct: 1033 atatcttctgttcaggttgctgatcccatccgctggcctaattctccgtggcggcttctg 1092
Query: 322 caggtagcatgggatgagccggatttactccagaatgtgaagtgtgttagcccatggctg 381
||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct: 1093 caggtggcatgggatgagccagatttacttcagaatgtgaagcgtgttagcccatggcta 1152
Query: 382 gttgaattggtatcaaacatgccggcaattcacctatcacccttttcacctccaaggaaa 441
|||||| ||||| |||||||||| || ||||||| || ||||| || ||||| ||||||
Sbjct: 1153 gttgaactggtagcaaacatgccagccgttcacctttcgcccttctcgcctcctaggaaa 1212
Query: 442 aagttgagacttccacagcctccagactttccgttactcggccattttccaatgccatca 501
|| |||||| ||||||| | |||||||| | ||| | ||||| ||| |||||||||
Sbjct: 1213 aaattgagaattccacaaaccccagacttctccttaattggccaacttcagatgccatca 1272
Query: 502 tttaccagcaaccccctaaattcaaacagtcccttatgctgtgtctcagataacattcct 561
|||||||||||| | || |||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1273 tttaccagcaacactctcaatttgaacagtcccttatgctgtgtctcagataacattact 1332
Query: 562 gcaggcatacagggagccaggcatgctcagtatggactatcttcagcagatctccacttc 621
||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 1333 gcacgcatacagggagccaggcatgctcaatttggactatcttcagcagatctccacatc 1392
Query: 622 aacaaactgcagtcg 636
|||||||||||||||
Sbjct: 1393 aacaaactgcagtcg 1407
Score = 87.7 bits (44), Expect = 1e-16
Identities = 146/180 (81%)
Strand = Plus / Plus
Query: 1002 gaaaactgatcttagcttggagactggtcattgcaaggtgttcagagaatcagatgattt 1061
||||||||| ||| || |||| ||||||||||||||||| |||| |||||||| ||| |
Sbjct: 1488 gaaaactgaccttggcctggaaactggtcattgcaaggtcttcatggaatcagaagatgt 1547
Query: 1062 aggtcgaacactggacctttctgtctttggttcatatgaggaactgtacggaaaactggc 1121
|||||||| || ||| | || ||| ||||||||||||| || || || |||||| | ||
Sbjct: 1548 gggtcgaaccctagacttatcagtccttggttcatatgaagagctctatggaaaattagc 1607
Query: 1122 taacatgtttggcgtcaagcgatcagatatgtttagcagtgtgctttaccgggatgcagc 1181
|||||||||| | || ||||||||||| |||||||| |||||| ||||||||||
Sbjct: 1608 caacatgtttgagattgagaattcagatatgttgagcagtgttctttacagggatgcagc 1667
>30078.m002329 Auxin response factor, putative
Length = 2109
Score = 214 bits (108), Expect = 9e-55
Identities = 336/412 (81%)
Strand = Plus / Plus
Query: 39 gaaagggaaagtgagagctgagtctgttattcaggctgcaactcttgctgctaatggtca 98
|||||||||||||| ||||| || ||||| | ||||| || |||||||||||||| ||
Sbjct: 834 gaaagggaaagtgaaggctgaatcagttatagaagctgctacccttgctgctaatggaca 893
Query: 99 accttttgatgctgtttactatccaagagctagtactcctgagttttgtgttaaggcctc 158
|||||||| | |||||||| || ||||||||||||||||||| ||||||||||| ||
Sbjct: 894 gccttttgaggtagtttactaccctcgagctagtactcctgagttctgtgttaaggcttc 953
Query: 159 ggctgtgagggctgcaatgcagattcagtggtgtccagggatgagattcaaaatggcttt 218
|||| |||||| | ||||| | ||||||| | |||||||| || |||||||| ||
Sbjct: 954 tatggtgaaagctgcatttcagatccggtggtgttcggggatgaggtttaaaatggcatt 1013
Query: 219 tgagacagaagattcatcccggattagttggtttatgggaacaatatcttctgttcaggt 278
||| || || ||||| || |||||||| |||||||||||||| || |||||||||| ||
Sbjct: 1014 tgaaactgaggattcttcacggattagctggtttatgggaactattgcttctgttcaagt 1073
Query: 279 tgcggatcctattcgttggcctagttctccatggcggcttctacaggtagcatgggatga 338
||| |||||| |||||||||| ||| |||||| |||| || ||||| | ||||||||
Sbjct: 1074 tgctgatcctcttcgttggcccgattcgccatggaggctcctccaggttacttgggatga 1133
Query: 339 gccggatttactccagaatgtgaagtgtgttagcccatggctggttgaattggtatcaaa 398
|| || || ||||| ||||||||| |||| ||||||||||| || ||||||||||||||
Sbjct: 1134 acctgacttgctccaaaatgtgaagcgtgtgagcccatggctagtagaattggtatcaaa 1193
Query: 399 catgccggcaattcacctatcacccttttcacctccaaggaaaaagttgaga 450
|||||| | || || || || || || ||||| |||||||| |||||||||
Sbjct: 1194 catgcccgtcatccatctgtccccattctcaccaccaaggaagaagttgaga 1245
Score = 83.8 bits (42), Expect = 2e-15
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 548 cagataacattcctgcaggcatacagggagccaggcatgctcagtatggactatcttcag 607
||||||||| |||||| ||||| |||||||||||||||||||| ||||| ||| ||| |
Sbjct: 1343 cagataacactcctgctggcatgcagggagccaggcatgctcattatggtctacctttat 1402
Query: 608 cagatctccacttcaacaaactgcag 633
||||||||| | |||| |||||||||
Sbjct: 1403 cagatctccgcctcaataaactgcag 1428
Score = 52.0 bits (26), Expect = 8e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 1017 cttggagactggtcattgcaaggtgttcagagaatcagatgatttaggtcgaacactgga 1076
||||||||||||||||||||| || |||| |||||||| ||| | || ||||| || ||
Sbjct: 1839 cttggagactggtcattgcaaagtcttcatggaatcagaggatgtgggccgaactcttga 1898
Query: 1077 cctttc 1082
||||||
Sbjct: 1899 cctttc 1904
>27538.m000327 Auxin response factor, putative
Length = 2130
Score = 182 bits (92), Expect = 3e-45
Identities = 299/368 (81%)
Strand = Plus / Plus
Query: 80 ctcttgctgctaatggtcaaccttttgatgctgtttactatccaagagctagtactcctg 139
|||||||||| ||||| ||||| ||||| | ||||||||||||| | || || || || |
Sbjct: 836 ctcttgctgccaatggacaaccgtttgaggttgtttactatccacgggcaagcacaccag 895
Query: 140 agttttgtgttaaggcctcggctgtgagggctgcaatgcagattcagtggtgtccaggga 199
||||||||||||||||||| | || || ||| | | ||| |||||||| | || |
Sbjct: 896 agttttgtgttaaggcctcttcggttagagcttcgaccaggatccagtggtgctctggaa 955
Query: 200 tgagattcaaaatggcttttgagacagaagattcatcccggattagttggtttatgggaa 259
|||| || || ||||| ||||||||||| ||||| || ||||||| ||||| ||||| |
Sbjct: 956 tgaggtttaagatggcctttgagacagaggattcttcaaggattagctggttcatgggta 1015
Query: 260 caatatcttctgttcaggttgcggatcctattcgttggcctagttctccatggcggcttc 319
| || ||||||||||||| || ||||| ||||| ||||||| ||| || ||||| ||||
Sbjct: 1016 ctattgcttctgttcaggtggctgatccgattcggtggcctaattcaccttggcgacttc 1075
Query: 320 tacaggtagcatgggatgagccggatttactccagaatgtgaagtgtgttagcccatggc 379
| |||||| ||||||||||||| ||||| || || ||||| || |||| |||||||||
Sbjct: 1076 tccaggtaacatgggatgagccagatttgctgcaaaatgtaaaacgtgtcagcccatggt 1135
Query: 380 tggttgaattggtatcaaacatgccggcaattcacctatcacccttttcacctccaagga 439
||||||||||||||||||| ||||| | || ||||| |||||||| ||||||||||| |
Sbjct: 1136 tggttgaattggtatcaaatatgccagtcatccacctgtcacccttctcacctccaagaa 1195
Query: 440 aaaagttg 447
| ||||||
Sbjct: 1196 agaagttg 1203