Jatropha Genome Database
- JcCB0466631.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0466631.20 - phase: 1 /TE/partial
(1808 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014390 brca1 interacting protein helicase 1 brip1, putative 246 4e-64
>30170.m014390 brca1 interacting protein helicase 1 brip1, putative
Length = 3747
Score = 246 bits (124), Expect = 4e-64
Identities = 315/378 (83%), Gaps = 3/378 (0%)
Strand = Plus / Plus
Query: 731 ttctgatcctgtcatggacaagaaattaagaatttcttgttcgctctgcaagagcccttt 790
|||||||||||||||||| |||||||| |||||||||||| |||||||| || || ||
Sbjct: 3183 ttctgatcctgtcatggatcagaaattacaaatttcttgttcactctgcaaaagtccatt 3242
Query: 791 gggtcgtcctgaaaatcagttatatgttaggtgctcgttgacttcatcatcaaaagttca 850
||||| |||||||||||| |||||||| || ||||| |||||||| |||||||| ||||
Sbjct: 3243 gggtcttcctgaaaatcaattatatgtcagatgctcattgacttcgacatcaaaaattca 3302
Query: 851 cttaaggtctcttgtgaaagaaagattggaacgttgcactgagaatacatctacatgcat 910
||||| |||||| | ||||||||||| ||| ||||| | |||||| | | || |
Sbjct: 3303 cttaacgtctctaggaaaagaaagatttgaatattgcagcaacaataca---aaaagcgt 3359
Query: 911 acctgtccttatgactgatattacatctgtagatcagcgtctctgcaatagtaatcttga 970
|||||| || ||| |||||||| |||| |||||||||||||| | ||||| || |||| |
Sbjct: 3360 acctgttctcatggctgatattgcatcagtagatcagcgtctttacaatattactcttaa 3419
Query: 971 agataagccaggtcgaggagtttggtgcgaggaagatgggtgtgttttcagttctatctt 1030
|||||| ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 3420 agataatccagggcgaggggtttggtgcgaagaagatgggtgtgttttcaattctatcta 3479
Query: 1031 gtgccctttctgcagtacctttaactgtcttggagtccaaatcatggcagctgatgcctc 1090
||||| |||||||| | | ||| || |||||||| ||||||||||| ||||||| ||
Sbjct: 3480 ttgcccgttctgcagcagttctaattgccttggagtacaaatcatggcgactgatgcatc 3539
Query: 1091 caacgttcaattacttaa 1108
|| ||||||||||||||
Sbjct: 3540 aaatgttcaattacttaa 3557
Score = 119 bits (60), Expect = 6e-26
Identities = 93/104 (89%)
Strand = Plus / Plus
Query: 1704 catagcccaagcatggacaaaattgctgcctttaactccattgatagattctcatatagc 1763
||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |
Sbjct: 3640 catagcccaagcatggataaaactgctgcttttaactccattgatagattctcatactcc 3699
Query: 1764 ccacagcagaactccggaggctggaggactacaaggccaaaggt 1807
|| || ||||| || ||||| |||||||||||||||||||||||
Sbjct: 3700 ccgcatcagaattctggaggttggaggactacaaggccaaaggt 3743
Score = 81.8 bits (41), Expect = 1e-14
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 446 ctgcagcctgatacctgaagcagagtcgactctaaatttgagtgttaattctcatac 502
||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 2892 ctgcagcctgataccagaagctgagtctactcttaatttgagtgttaattctcatac 2948
Score = 60.0 bits (30), Expect = 5e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1243 agatattgttttattttgatcatctggaaattcaggatcttgaaggatca 1292
|||||||||||||||||||| ||||||||||||| |||| |||| ||||
Sbjct: 3560 agatattgttttattttgatggtctggaaattcagaatctggaagcatca 3609
Score = 56.0 bits (28), Expect = 8e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 606 acaattgccattaaagatgcaagtcggaggattgaatttgattt 649
||||| |||| ||||||||||| ||| |||||||||||||||||
Sbjct: 3052 acaatggccagtaaagatgcaaatcgcaggattgaatttgattt 3095