Jatropha Genome Database

JcCB0462781.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0462781.10 - phase: 0 /partial
         (359 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29905.m000446 conserved hypothetical protein                           88   4e-17

>29905.m000446 conserved hypothetical protein
          Length = 3144

 Score = 87.7 bits (44), Expect = 4e-17
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 29  cagatgaaaatccagatctgcagaagcagattggatgtatgaatggtattcttcaactgt 88
           ||||||| || |||||||||||||| |||||||||||||||||||| ||| ||||||| |
Sbjct: 29  cagatgagaacccagatctgcagaaacagattggatgtatgaatggaatttttcaactct 88

                           
Query: 89  ttgaccgccaccattt 104
           |||| ||||| |||||
Sbjct: 89  ttgaacgccatcattt 104



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 88/105 (83%), Gaps = 3/105 (2%)
 Strand = Plus / Plus

                                                                       
Query: 226 aagaaggccatcaaagagaaacagagagtctccactgaatcatcaagaacctcgttttcc 285
           ||||||||  ||||||| ||||| ||| |||||||||||||||| ||||| || ||||| 
Sbjct: 220 aagaaggctgtcaaagaaaaacaaagaatctccactgaatcatccagaacatcattttca 279

                                                        
Query: 286 tct---gcatgttcttctagtctttcatctttagaatgcaataat 327
           |||    | ||||| |||||||| |||||||| ||||||||||||
Sbjct: 280 tcttcctcttgttcatctagtctctcatctttggaatgcaataat 324