Jatropha Genome Database

JcCB0449001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0449001.10 + phase: 0 /TE/partial
         (783 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011157 dead box ATP-dependent RNA helicase, putative           498   e-140

>30190.m011157 dead box ATP-dependent RNA helicase, putative
          Length = 1788

 Score =  498 bits (251), Expect = e-140
 Identities = 407/459 (88%)
 Strand = Plus / Plus

                                                                       
Query: 318 attttctgcaaaatcgttttctgagcttggccttccacctctgttgctagaaaggttgga 377
           |||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 420 atttgctgcaaaatcgttttctgagcttggcctcccgcctctgttgcttgaaaggttgga 479

                                                                       
Query: 378 gagtgaaggcttcaaagttccaactgatgttcagtctgcagctatccccactattctcaa 437
           |||||||||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct: 480 gagtgaaggctttaaagttccaacagaagttcagtctgcagctattcctaccattctcaa 539

                                                                       
Query: 438 gaatcatgatgttgtcatacagtcttatacggggtcaggaaaaacactggcgtatgtcct 497
           |||||||||||||||||||||||||||||| || || ||||||||| |||||||| ||||
Sbjct: 540 gaatcatgatgttgtcatacagtcttatacaggttcgggaaaaacattggcgtatctcct 599

                                                                       
Query: 498 cccaatactgtccgaagttgggccattgacaaataaatcttctaatggcgataaggaaga 557
            || |||||||| |||||||| ||  |||   ||||||||||||| ||  || | |||| 
Sbjct: 600 tcctatactgtctgaagttggacctctgatcgataaatcttctaagggtaatgaagaagt 659

                                                                       
Query: 558 tcggaaaaaaccagagatagaagcagttatcgttgctccatctagggaactgggaatgca 617
           | |||||||| ||||||| ||||||||||| ||||||||||||||||| ||||  |||||
Sbjct: 660 tgggaaaaaatcagagattgaagcagttattgttgctccatctagggagctggctatgca 719

                                                                       
Query: 618 aattgtgagggaagttgaaaagcttctgggaccagctaacaagaaagcagttcagcaact 677
           ||||||||| || |||||||| || || ||||| || |||||||||||||||||||||||
Sbjct: 720 aattgtgagagaggttgaaaaactgcttggaccggcaaacaagaaagcagttcagcaact 779

                                                                       
Query: 678 tgttgggggtgcaaaccgatcaagacaagaagaagctcttaagaaaaacaagccagcaat 737
           |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct: 780 tgttgggggtgcaaaccgatcacgacaagaagaagctcttaggaaaaataagccagcaat 839

                                                  
Query: 738 tgttgttggtactcctggcaggattgcagaaattagtgc 776
             ||||||||||||||||||||||| |||| || |||||
Sbjct: 840 cattgttggtactcctggcaggatttcagagatcagtgc 878



 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 192 taaaacagataaacgtgagaaagttaagctggattcagctattgaagtccccaaaagtaa 251
           ||||||| |||||| ||||||| |||||| | ||||||||||||| ||||| | ||||||
Sbjct: 291 taaaacaaataaacatgagaaatttaagcagaattcagctattgatgtccctagaagtaa 350

              
Query: 252 agt 254
           |||
Sbjct: 351 agt 353