Jatropha Genome Database

JcCB0445261.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0445261.10 + phase: 0 /partial
         (647 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003360 Cyclic nucleotide-gated ion channel, putative           228   3e-59

>29822.m003360 Cyclic nucleotide-gated ion channel, putative
          Length = 1965

 Score =  228 bits (115), Expect = 3e-59
 Identities = 433/537 (80%), Gaps = 4/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 110 accctctccttatcctatggcggtaccagatcctcgatccggacagcgacattgtcacct 169
           ||||||||| ||| |||||||  ||||| |||||||| ||||||||||| |||||||| |
Sbjct: 113 accctctccatattctatggcattaccaaatcctcgacccggacagcgatattgtcactt 172

                                                                       
Query: 170 attggaattacgtcttccttataacctctattattgctctcttcatcgatcctcttttct 229
           | ||||| ||||| |||||||| || |||||  | ||||| ||| |||| || || || |
Sbjct: 173 actggaactacgttttccttatcacatctatcgtcgctcttttcgtcgacccgctctttt 232

                                                                       
Query: 230 tcttcctcccttatgcgaatttcgacggcctctgtttaagcaacga--caatcatctcgc 287
           |||| |||||||||||  ||  ||||||| |||| || |  || ||  ||| |  || ||
Sbjct: 233 tctttctcccttatgcagatgccgacggcgtctgcttgacaaatgatgcaagc--cttgc 290

                                                                       
Query: 288 tatcttaatcacctattttagatcaatatctgatttattcttcgtgctgcatataatcat 347
           | |  |||| || |||||||| ||  |  |||| || |||||  |||||||||| |||||
Sbjct: 291 tgttctaattacttattttaggtccttcgctgacttgttctttttgctgcatatcatcat 350

                                                                       
Query: 348 gaagtttcgtacggcttttgttgccccgaattctcgcgtttttgggcggggcgaactcgt 407
           |||||| ||||| ||||||||||| || |||||| | || || || || || ||||| ||
Sbjct: 351 gaagttccgtacagcttttgttgctccaaattctagagtgttcggtcgtggtgaacttgt 410

                                                                       
Query: 408 catggacgctaaggagatcgccatgcgttatcttaagtccgattttgttattgatttagc 467
           |||||| ||||| || ||||| |  |||||||||| ||| ||||||||||||||| | ||
Sbjct: 411 catggatgctaaagaaatcgctagacgttatcttaggtctgattttgttattgatcttgc 470

                                                                       
Query: 468 agccgcgcttccgcttccccagactgttatttgggtagtaattccagctacaagagatag 527
            || || ||||| ||||| |||  ||| |||||||| |||||||||||  ||||| || |
Sbjct: 471 cgctgcacttcctcttcctcaggttgtgatttgggtggtaattccagcggcaagaaatgg 530

                                                                       
Query: 528 tagagctgatcatgccaacaatacactctctcttatggttcttattcaatatattcccag 587
            |||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||
Sbjct: 531 aagagctgatcatgcaaacaatacactttctcttatagtacttattcaatatattcctag 590

                                                                    
Query: 588 aatgtttgttatcttccccttgcatcaacgcattgtaaaaactactggttttgttgc 644
           | | ||||||||||| || ||||| ||||| |||||||||| ||| |||||| ||||
Sbjct: 591 actctttgttatctttccattgcaccaacgaattgtaaaaagtacaggttttattgc 647