Jatropha Genome Database

JcCB0444641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0444641.10 + phase: 0 
         (288 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29784.m000370 Arginine/serine-rich-splicing factor, putative          113   6e-25

>29784.m000370 Arginine/serine-rich-splicing factor, putative
          Length = 747

 Score =  113 bits (57), Expect = 6e-25
 Identities = 134/161 (83%), Gaps = 9/161 (5%)
 Strand = Plus / Plus

                                                                       
Query: 137 atcgtggccgtgatgagtatcgtaggtctccaaggcgctctccttatcgtggg------- 189
           |||||||||||||||| ||||| |||||||||||||| |||||||||||||||       
Sbjct: 587 atcgtggccgtgatgattatcgcaggtctccaaggcgttctccttatcgtggggagcgtg 646

                                                                       
Query: 190 --ggtcatgattattctcctaggcactcaccctatgctggaagatcaaggagggataggt 247
             |||| ||| || |||||||||| ||| ||||||| |||||||||||| ||||| ||||
Sbjct: 647 caggtcgtgaatactctcctaggcgctctccctatggtggaagatcaagaagggacaggt 706

                                                    
Query: 248 ctagatctccctactctccaccttatcatggctctaggtga 288
           |||| || || || |||||  |||||||||| |||||||||
Sbjct: 707 ctaggtcaccatattctccttcttatcatggttctaggtga 747



 Score = 69.9 bits (35), Expect = 8e-12
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 53  caagaactccaacacctggacactatctgggactgaaaagtaatagagattatgg 107
           |||||||||||||||| ||||||||||| || |||||||||||||| || |||||
Sbjct: 464 caagaactccaacaccaggacactatcttgggctgaaaagtaatagggactatgg 518