Jatropha Genome Database

JcCB0433251.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0433251.20 - phase: 0 
         (369 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002014 replication factor C / DNA polymerase III gamma-ta...   448   e-125

>29648.m002014 replication factor C / DNA polymerase III gamma-tau
            subunit, putative
          Length = 1083

 Score =  448 bits (226), Expect = e-125
 Identities = 331/366 (90%)
 Strand = Plus / Plus

                                                                        
Query: 4    cagtcaacacacatggcttctgagcaaatcacggaagaagctgtatacctgtgcactgga 63
            ||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||
Sbjct: 718  cagtcaacacacatggcttctcagcaaattacagaagaagctgtacacctgtgcactgga 777

                                                                        
Query: 64   aatccattgcccagagacattgagcaaatatcttactggcttctaaatgaatcatttgct 123
            ||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct: 778  aatccattgcccaaagacattcagcaaatatcttactggcttttgaatgaatcatttgct 837

                                                                        
Query: 124  gaaactttaaaacgaatttctgaaatcaagacaaagaaaggattggcattagtagatatt 183
            |||| ||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 838  gaaagtttcaaaagaatttctgaaatcaagacaaagaaaggattggcattggtcgatatt 897

                                                                        
Query: 184  gtgagagaagtgactatgttcgtttttaagattaagatgccatcagatgtcagagttcag 243
            || || |||||||||||||| || || ||||| ||||||||||| |||||||||||||||
Sbjct: 898  gtaagggaagtgactatgtttgtcttcaagatcaagatgccatctgatgtcagagttcag 957

                                                                        
Query: 244  ttaattaatgacatggctgacatagagtacaggttgagtttcgggtgcaatgataagttg 303
            || |||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||
Sbjct: 958  ttgattaatgacatggctgacatagagtacaggttgagttttggttgcagtgacaagttg 1017

                                                                        
Query: 304  caacttggatcgctaatttcttcatttacacgggctcgatctacactggttgctgcagca 363
            ||||| ||||| ||  || |||| |||||| ||||||| ||| || ||||||||||||||
Sbjct: 1018 caactcggatcacttgttgcttcttttacatgggctcggtctgcattggttgctgcagca 1077

                  
Query: 364  aagtag 369
            ||||||
Sbjct: 1078 aagtag 1083