Jatropha Genome Database

JcCB0433251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0433251.10 + phase: 0 /partial
         (150 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002013 ubiquitin-protein ligase, putative                      109   4e-24

>29648.m002013 ubiquitin-protein ligase, putative
          Length = 6288

 Score =  109 bits (55), Expect = 4e-24
 Identities = 106/123 (86%)
 Strand = Plus / Plus

                                                                        
Query: 22   atccaaattgacaaggttgtgacagaaggcgtatacaacggattattcagccttaatcat 81
            ||||||||||| ||||| ||||| ||||| |||||||  ||| |||||||||| ||||||
Sbjct: 6157 atccaaattgataaggtcgtgacggaaggagtatacagtggactattcagcctcaatcat 6216

                                                                        
Query: 82   gaaagtaacaaagatggttcttccaggacgcttgaaattgagattagctggaccaacagg 141
            || | |||||||||||| || ||||| || ||||||||||||||||  ||||| ||||||
Sbjct: 6217 gataataacaaagatggctcctccagaacccttgaaattgagattatatggactaacagg 6276

               
Query: 142  aca 144
            |||
Sbjct: 6277 aca 6279