Jatropha Genome Database

JcCB0432541.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0432541.10 + phase: 0 /pseudo/partial
         (489 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006435 origin recognition complex subunit, putative            454   e-127

>30169.m006435 origin recognition complex subunit, putative
          Length = 2535

 Score =  454 bits (229), Expect = e-127
 Identities = 349/391 (89%), Gaps = 11/391 (2%)
 Strand = Plus / Plus

                                                                        
Query: 109  caggaaaaggccttgttggtatgtccgaggttgaggcagctattcaagaaatgttccagg 168
            ||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 2141 caggaaaagaccttgttggtatgtcagatgttgaggcagctattcaggaaatgttccagg 2200

                                                                        
Query: 169  cacctcatattcaagtaatgaaaaattgttctaagctcagcaaaattttcttggcggcta 228
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 2201 cacctcatattcaagtgatgaaaaattgttcaaagctcagcaaaattttcttgaccgcta 2260

                                                                        
Query: 229  tggtgtatgaactctataaaacggggatgggggagacaacctttgaaaagttggcaatga 288
            ||||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 2261 tggtgtacgagctctataaaacagggatgggggagacaaactttgaaaagttggcaatga 2320

                                                                        
Query: 289  ccgtttcatgtctctgtacaagcaatggagaagcatttcctggttgggacactctcttga 348
            | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2321 ctgtttcatgtctctgcacaagcaatggagaagcatttgctggttgggacactctcttga 2380

                                                                        
Query: 349  gagttg-----------ggtgaaagcagaataattctatgcgaacctggagctaggcata 397
             |||||           ||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct: 2381 aagttggatgcatgttaggtgaaagcagaataattcaatgtgaacctggagctaggcaca 2440

                                                                        
Query: 398  ggttgcagaaattgcagctcaactttccaagtgatgatgtggcttttgcactgaaaggga 457
            | ||||||||  |||||||||| |||||||||||||| |||||||||||| ||||||| |
Sbjct: 2441 gattgcagaagctgcagctcaattttccaagtgatgacgtggcttttgcattgaaaggca 2500

                                           
Query: 458  gccaagagttaccgtggctggccaagtattt 488
            || | ||| |||| ||| |||||||||||||
Sbjct: 2501 gcaaggagctaccatggttggccaagtattt 2531