Jatropha Genome Database

JcCB0430801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0430801.10 + phase: 2 /pseudo/partial
         (588 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000208 DNA binding protein, putative                           454   e-127

>29999.m000208 DNA binding protein, putative
          Length = 2571

 Score =  454 bits (229), Expect = e-127
 Identities = 473/553 (85%), Gaps = 11/553 (1%)
 Strand = Plus / Plus

                                                                        
Query: 46   aaagaaaacaaatgaaggaggcaccaggtagaagagataacgatcttcatcgtttacttt 105
            ||||||||||||||| |||||||||||  ||||| ||||| ||||||||||| || ||||
Sbjct: 1215 aaagaaaacaaatgagggaggcaccaga-agaagggataatgatcttcatcgcttgcttt 1273

                                                                        
Query: 106  tcatgccaaatggtcttccagatggtgctgaattggcttactatgtcaaaggacaa---- 161
            ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||    
Sbjct: 1274 tcatgccaaatggtcttccagatggggctgaattggcgtactatatcaaaggacaaaaaa 1333

                                                                        
Query: 162  -gt-----ggttacaagcagggaaatggcatagtttgtagttgctgcgacagagagataa 215
             ||     |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1334 tgttggccggttacaaacagggaaatggtatagtctgtagttgctgcgacagagagatta 1393

                                                                        
Query: 216  gcccttctcaatttgaagcacatgctggaatggctgctaggcgccaaccctaccgtcaca 275
            |||| |||||||||||||||||||||||||||||||| ||||| |||||||| || ||||
Sbjct: 1394 gcccatctcaatttgaagcacatgctggaatggctgccaggcgtcaaccctatcgacaca 1453

                                                                        
Query: 276  tctatacttccaatggtttaactcttcatgatatagcaatttcattggcaaatgggcaaa 335
            |||||||||| |||||  | || || ||||||||||| |  |||||||||||||||||||
Sbjct: 1454 tctatacttctaatgggctcaccctccatgatatagctacatcattggcaaatgggcaaa 1513

                                                                        
Query: 336  atgttacctctggggtgagtgatgatatgtgtgcaaaatgtggcgacggagggggtctaa 395
            |  ||||| ||||  | |||||||||||||||||| |||| || || |||||||  ||||
Sbjct: 1514 accttaccactggattaagtgatgatatgtgtgcagaatgcggtgatggaggggacctaa 1573

                                                                        
Query: 396  tattctgcgagagttgccctcgagcttttcatctcgaatgtttggatttgcagtgtgttc 455
            |||||||||||||||||||||| ||||||||||| | |||||||| |||  ||| ||| |
Sbjct: 1574 tattctgcgagagttgccctcgggcttttcatctagtatgtttgggtttaaagtatgtcc 1633

                                                                        
Query: 456  caaaaggtgtttggcagtgtccaagctgtattaagtctggacatggaggaaacttcacaa 515
            | |  | ||||||||| ||||| | ||||| ||||| ||||||||||||||| ||  | |
Sbjct: 1634 ccagtgatgtttggcattgtccgaactgtaataagtttggacatggaggaaatttttcta 1693

                                                                        
Query: 516  gaccaataattattcggttgactcgggttgttaaaatgccagagtatgaagttggtggtt 575
            || ||||  |||||||||||||||| ||||||||||  || |||||||||||||||||||
Sbjct: 1694 gatcaattgttattcggttgactcgagttgttaaaactccggagtatgaagttggtggtt 1753

                         
Query: 576  gtgctgtttgcag 588
            ||| | |||||||
Sbjct: 1754 gtgttttttgcag 1766