Jatropha Genome Database

JcCB0430531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0430531.10 - phase: 0 /pseudo/partial
         (466 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003913 Transcription factor BIM1, putative                     202   1e-51

>30138.m003913 Transcription factor BIM1, putative
          Length = 1704

 Score =  202 bits (102), Expect = 1e-51
 Identities = 180/206 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgataaaatcagccaaaggcagtacgcaagatgataatttagatgatgaggaagagttt 60
           |||||||||||||||||||  ||| | || |||||||| ||||| || ||||||||||||
Sbjct: 640 atgataaaatcagccaaagatagttcccaggatgataaattagacgaggaggaagagttt 699

                                                                       
Query: 61  gttcttaaaaaagaaagttcttcccctgtccataaaggggaattgagggtgaaagtggat 120
           |||||||||||||| |   |||| ||  ||| ||||||||| ||||| || |||||||||
Sbjct: 700 gttcttaaaaaagagaccccttcgccaatccgtaaaggggagttgagagtaaaagtggat 759

                                                                       
Query: 121 gggaagagcaccgatcagaaggctaacacgcctcggtcaaaacactctgccactgagcaa 180
           ||||||||||| ||||||||||||||||| || || |||||||| || ||||||||||||
Sbjct: 760 gggaagagcactgatcagaaggctaacactccacgttcaaaacattcggccactgagcaa 819

                                     
Query: 181 cggaggaggagcaaaataaatgacag 206
           |||||||| |||||||||||||||||
Sbjct: 820 cggaggagaagcaaaataaatgacag 845



 Score =  145 bits (73), Expect = 3e-34
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                        
Query: 316  gagtacattcaatttttacaggagaaagtacaaaaatatgaagggtcgtaccaaggatgg 375
            ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 922  gagtatattcagtttttacatgagaaagtacataaatatgaagggtcgtaccaaagatgg 981

                                                         
Query: 376  aaccacgaacctgcaaaattggtgccatggagaaatggtaacagg 420
            ||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 982  aacaatgaacctgcaaaattggtgccatggagaaatggtagcagg 1026