Jatropha Genome Database

JcCB0429441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0429441.10 + phase: 0 
         (222 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002000 replication factor C / DNA polymerase III gamma-ta...   172   5e-43

>29648.m002000 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 1029

 Score =  172 bits (87), Expect = 5e-43
 Identities = 174/203 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgccagtattgccgaattcccaaccatgggttgagaaatatcgaccaaagcaagtt 60
           ||||||||| |||||| ||  || ||||||||||||||||||||||||||||||||||| 
Sbjct: 1   atggcgccaatattgcagagctcacaaccatgggttgagaaatatcgaccaaagcaagtg 60

                                                                       
Query: 61  aaagatgtggctcatcaggaggaggtggttcgggtcctcaccaacaccattgaaaccggt 120
           |||||||| ||||| ||||| || |||||||| || || ||||||||  | |||||| ||
Sbjct: 61  aaagatgtagctcaccaggaagaagtggttcgtgttcttaccaacactctcgaaaccagt 120

                                                                       
Query: 121 gattgcccacacatgctgttttatggcccacctggtaccggaaaaaccacctccgctctg 180
            ||||||| || ||||| ||||||||||||||||| ||||||||||| ||  | || |||
Sbjct: 121 aattgcccgcatatgctcttttatggcccacctgggaccggaaaaacgacgacagcactg 180

                                  
Query: 181 gccatcgctcgccagctttttgg 203
           || ||||||| ||||||||||||
Sbjct: 181 gctatcgctcaccagctttttgg 203