Jatropha Genome Database
- JcCB0428641.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0428641.10 - phase: 1 /partial
(809 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29866.m000621 conserved hypothetical protein 276 2e-73
30076.m004450 sensory transduction histidine kinase, putative 100 3e-20
29758.m000642 Two-component response regulator ARR2, putative 52 5e-06
>29866.m000621 conserved hypothetical protein
Length = 2004
Score = 276 bits (139), Expect = 2e-73
Identities = 493/607 (81%), Gaps = 8/607 (1%)
Strand = Plus / Plus
Query: 178 ttccagtcaatggtatgagcttcaataacctatgtaccaactatggttctgtatttcctc 237
||||||| |||||| | |||| ||||| ||||| |||| |||||||||| | ||| |||
Sbjct: 1373 ttccagttaatggtgtaggctttaataatctatgcaccagctatggttctatgttttctc 1432
Query: 238 caattttctgtaaacaa---tctggtgcatcacctataccgagtccaagttcatgcagcc 294
||||||| ||||||||| |||||||||||||| ||||| |||||||||||| ||||||
Sbjct: 1433 caattttttgtaaacaacagtctggtgcatcaccaatacccagtccaagttcaggcagcc 1492
Query: 295 agccagagccaacctctaaagtgaatgcatttcctcagtctactttgaggagtaactccg 354
|||| ||||| | | |||||||||| |||||| |||| | ||| | ||||| || |
Sbjct: 1493 agccggagcccaattgtaaagtgaatccatttcggcagttcaatttcataagtaattctg 1552
Query: 355 atcagctctatgattgtcttggtc-aaactgcaaaagattccactagtccatctcttcaa 413
| | ||||||||| | ||| || |||| ||||| ||| | | | | | || |||
Sbjct: 1553 aaaatctctatgatgga-ttgatccaaacagcaaatgatactgccaacagaaccctgcaa 1611
Query: 414 aagcaggatcacaagttggattctttggaggatcgaggacatatttctgctgccactgat 473
|||||||| | |||||||| || ||||||||||||||||||||| || ||||||||
Sbjct: 1612 aagcaggacaaggagttggatcctccagaggatcgaggacatatttctcctaccactgat 1671
Query: 474 catagtgcaactagcagcttctgcaatgttagtgcaactcatcttaacatgggctatgga 533
|| ||||||||||| ||||||| |||| | ||||| ||||||||| ||||| ||||||
Sbjct: 1672 cagagtgcaactagtagcttctataatggtgctgcaagtcatcttaatatgggttatgga 1731
Query: 534 agcacttctgggagcaatagcaatgtggatcaggctgctattatcaggactacttcagaa 593
||| ||||||||| ||||||||||| ||||||| ||||| | ||||| | || ||||
Sbjct: 1732 agccattctgggagtaatagcaatgttgatcaggttgctaatgtcagggttgctgcagag 1791
Query: 594 agaaaaaatgaaggtggtattttacataatgatgcaaattcacatcgagctatacaaaga 653
||||||||||||| ||| ||||||||| | |||| ||||||||| |||| ||||||
Sbjct: 1792 agaaaaaatgaagaaagtactttacataacg---caaactcacatcgatctatccaaaga 1848
Query: 654 gaagcagctttaacaaagtttcgcttgaagcggaaagatagatgctacgagaagaaggtt 713
||||| ||| | | ||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 1849 gaagcggctcttaataagtttcgcttgaagaggaaagacagatgctatgagaagaaggtg 1908
Query: 714 cgctatgagagtaggaaaaaacttgcagagcaacggcctagagtgaaaggtcaatttgtt 773
|||||||||||||||||||| || |||||||| || |||||||| ||||| |||||||||
Sbjct: 1909 cgctatgagagtaggaaaaagctcgcagagcagcgtcctagagtaaaaggacaatttgtt 1968
Query: 774 cgtcaag 780
|| ||||
Sbjct: 1969 cggcaag 1975
>30076.m004450 sensory transduction histidine kinase, putative
Length = 2094
Score = 99.6 bits (50), Expect = 3e-20
Identities = 116/138 (84%)
Strand = Plus / Plus
Query: 648 caaagagaagcagctttaacaaagtttcgcttgaagcggaaagatagatgctacgagaag 707
||||||||||||||||| |||||||| || |||||||||||||| | ||||| |||||
Sbjct: 1918 caaagagaagcagctttgacaaagttccgactgaagcggaaagatcgctgctatgagaaa 1977
Query: 708 aaggttcgctatgagagtaggaaaaaacttgcagagcaacggcctagagtgaaaggtcaa 767
|||||||| ||| | || |||||| ||| ||||||| || || || |||||||| ||
Sbjct: 1978 aaggttcgatatcaaagccggaaaagactagcagagctgcgtccaagggtgaaagggcag 2037
Query: 768 tttgttcgtcaagtgcaa 785
||||||||||||||||||
Sbjct: 2038 tttgttcgtcaagtgcaa 2055
>29758.m000642 Two-component response regulator ARR2, putative
Length = 1980
Score = 52.0 bits (26), Expect = 5e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 685 ggaaagatagatgctacgagaagaaggttcgctatgagagtaggaaaaaacttgcaga 742
||||||| ||||||| |||||||||||||| || |||| ||||||||||| |||||
Sbjct: 1847 ggaaagagagatgctttgagaagaaggttcgataccagagcaggaaaaaactggcaga 1904