Jatropha Genome Database

JcCB0427111.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0427111.20 - phase: 0 
         (165 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013972 26 proteasome complex subunit DSS1, putative            157   2e-38
29822.m003358 26 proteasome complex subunit DSS1, putative             84   3e-16

>30147.m013972 26 proteasome complex subunit DSS1, putative
          Length = 225

 Score =  157 bits (79), Expect = 2e-38
 Identities = 103/111 (92%)
 Strand = Plus / Plus

                                                                       
Query: 33  agagtgggaggacaaggaggaagggaaagaggtgacacaacagtgggaagatgattggga 92
           |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 93  agagtgggaggagaaagaggaagggaaagagatgacacaacagtgggaagatgattggga 152

                                                              
Query: 93  tgatgatgatgtcaatgatgacttctcactgcagctgaggagagaattgga 143
           ||||||||| |||| |||||||||||| |||||||||||||| ||| ||||
Sbjct: 153 tgatgatgacgtcagtgatgacttctccctgcagctgaggagggaactgga 203


>29822.m003358 26 proteasome complex subunit DSS1, putative
          Length = 222

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                       
Query: 33  agagtgggaggacaaggaggaagggaaagaggtgacacaacagtgggaagatgattggga 92
           ||||||||| |||||||| ||||| |||||  |  | ||||| |||||||||||||||||
Sbjct: 90  agagtgggatgacaaggaagaaggaaaagaaatagctcaacaatgggaagatgattggga 149

                                                         
Query: 93  tgatgatgatgtcaatgatgacttctcactgcagctgaggagagaa 138
            || |||||||| |||||||||||||| ||||| || |||| ||||
Sbjct: 150 cgacgatgatgtgaatgatgacttctctctgcaacttaggaaagaa 195