Jatropha Genome Database

JcCB0424221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0424221.10 + phase: 0 /pseudo/partial
         (417 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004751 conserved hypothetical protein                          168   2e-41

>29929.m004751 conserved hypothetical protein
          Length = 1446

 Score =  168 bits (85), Expect = 2e-41
 Identities = 235/285 (82%)
 Strand = Plus / Plus

                                                                        
Query: 133  ttctttcagaagcttgaagagaaaaacaatgcaaaggaggcagagaaatcacatttgcat 192
            ||||||||||||||||||||||| |||| ||||||||||| ||| ||  ||| | |||| 
Sbjct: 1159 ttctttcagaagcttgaagagaagaacagtgcaaaggaggtagaaaagacacgtgtgcaa 1218

                                                                        
Query: 193  gtaaaatcgaagattccattgacacggcctcgatctcctaaacttggaagaaagccctct 252
            || ||||| ||| |||| |||||||| |||||||| || || || ||||||||||| || 
Sbjct: 1219 gttaaatctaaggttcctttgacacgacctcgatcaccaaagctgggaagaaagccttcg 1278

                                                                        
Query: 253  tcctatatggtccaggaagcaagctttcagcatcctcaaaggccttcagtcaatgctgaa 312
            ||| || |||| |||||| |||||||||  | ||||     ||||||||   |||||| |
Sbjct: 1279 tccaatgtggtacaggaaacaagctttccacttcctaggcagccttcagcacatgctgca 1338

                                                                        
Query: 313  agctctaagcgtgttgtaccgaaaggtaaccaaagcacaactcactcgatcactttgcta 372
            ||||| |||||| ||||| | |||||||| ||||||| |||||  ||  |||||||||||
Sbjct: 1339 agctccaagcgtattgtatccaaaggtaatcaaagcataactcgttcagtcactttgcta 1398

                                                         
Query: 373  acaaggaaaaaagcacatgagaatgcttctccaaatattcagcat 417
             ||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 1399 ccaaagaagaaagcacatgagaatgcttctccaaatatccagcat 1443