Jatropha Genome Database

JcCB0424111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0424111.10 + phase: 2 /partial
         (310 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003276 DNA-directed RNA polymerase II, putative                242   1e-63

>29889.m003276 DNA-directed RNA polymerase II, putative
          Length = 801

 Score =  242 bits (122), Expect = 1e-63
 Identities = 206/234 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacaacattctctaccccaaggaagacaagaagcagaggatcctcctctacgcatgtcg 60
           ||||||| | |||||||| |||||||||| |||||| |||||||| ||||| ||||||||
Sbjct: 30  taacaacgtcctctaccctaaggaagacaggaagcaaaggatccttctctatgcatgtcg 89

                                                                       
Query: 61  aaactgtgatcaccaggaggttgcagataataatcgtgtttatagaaatgaagtacagca 120
           |||||| || |||||||||||||| |||| |||||| || || ||||||||  |||| ||
Sbjct: 90  aaactgcgagcaccaggaggttgctgatagtaatcgggtatacagaaatgagatacacca 149

                                                                       
Query: 121 ctccgttacagaattcacacaaatattgcaggatgtagcctcagatccaactctacctcg 180
           ||| ||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 150 ctctgtttcagaacacacacaaatactgcaggatgtagcctcagatccaactctacctcg 209

                                                                 
Query: 181 aactaaatcggttcgctgcagtgcatgtggccatggcgaagctgtctttttaca 234
            |||||||| ||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct: 210 tactaaatcagttcgttgtagtgcatgtggccatggggaagctgtcttcttaca 263



 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 40  gatcctcctctacgcatgtcgaaactgtgatcaccaggaggttgcagataataatcgtgt 99
           ||||||||||||||| ||||| ||||||||||| |||||| | ||||| | |||  ||||
Sbjct: 525 gatcctcctctacgcctgtcgcaactgtgatcatcaggagatagcagagagtaactgtgt 584

                                   
Query: 100 ttatagaaatgaagtacagcactc 123
            ||||||||||| ||||| |||||
Sbjct: 585 gtatagaaatgaggtacatcactc 608



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 260 acactgttctatgtctgctgcaatccaaattgtggaaatcggtggagagat 310
           |||||||||| |||||||||||| |||| ||||||  |||| |||||||||
Sbjct: 748 acactgttctttgtctgctgcaacccaatttgtgggcatcgttggagagat 798