Jatropha Genome Database

JcCB0399111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0399111.10 + phase: 0 
         (276 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003497 transcription regulator, putative                       260   4e-69
30147.m014102 transcription regulator, putative                        70   7e-12
29736.m002007 transcription regulator, putative                        50   7e-06

>29822.m003497 transcription regulator, putative
          Length = 273

 Score =  260 bits (131), Expect = 4e-69
 Identities = 215/243 (88%)
 Strand = Plus / Plus

                                                                       
Query: 34  gttccaagaattagtgatgaacaaatcatcgaacttatctccaagttacgtcagcttcta 93
           ||||| ||||| | |||||| ||||||||||| ||| ||||||||||||| |||||||| 
Sbjct: 31  gttcctagaatcactgatgatcaaatcatcgaccttgtctccaagttacgccagcttctt 90

                                                                       
Query: 94  ccggagattcgtgacaggcgctctgataaggtatcagcttccaaggtcctacaagaaacc 153
           || ||||||||  | |||||  | ||||||||||||||||| |||||||||||||| |||
Sbjct: 91  cctgagattcgccaaaggcgtcccgataaggtatcagcttctaaggtcctacaagagacc 150

                                                                       
Query: 154 tgcaactatatcaggaacttgcacagggaagtggatgacttgagtgagagattgtctcaa 213
           |||||||| |||||||||||||||||||| ||||||||||| || ||| |||||||||| 
Sbjct: 151 tgcaactacatcaggaacttgcacagggaggtggatgacttaagcgagcgattgtctcag 210

                                                                       
Query: 214 cttttaacaacaattgatgctgatagtcctgaagctgctataataaggagtttaattatg 273
           |||||  | |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 211 cttttggctacaattgacgctgatagtcctgaagctgctataattaggagtttaattatg 270

              
Query: 274 taa 276
           |||
Sbjct: 271 taa 273


>30147.m014102 transcription regulator, putative
          Length = 276

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                       
Query: 73  tccaagttacgtcagcttctaccggagattcgtgacaggcgctctgataaggtatcagct 132
           ||||||||||  |||||||| || ||||||||| | ||||| ||||| ||||| ||||||
Sbjct: 76  tccaagttacaacagcttcttcctgagattcgtaataggcgttctgacaaggtttcagct 135

                                                                      
Query: 133 tccaaggtcctacaagaaacctgcaactatatcaggaacttgcacagggaagtggatga 191
            | |||||  | || || || |||||||||||||| | ||||||||| ||||| |||||
Sbjct: 136 gcgaaggtgttgcaggagacttgcaactatatcagaagcttgcacagagaagttgatga 194


>29736.m002007 transcription regulator, putative
          Length = 282

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 94/117 (80%)
 Strand = Plus / Plus

                                                                       
Query: 48  tgatgaacaaatcatcgaacttatctccaagttacgtcagcttctaccggagattcgtga 107
           |||||| ||||||||||| ||| | |||||||| |  || ||| | || ||||||||  |
Sbjct: 51  tgatgatcaaatcatcgatcttgtttccaagttgcaacaacttattcctgagattcggaa 110

                                                                    
Query: 108 caggcgctctgataaggtatcagcttccaaggtcctacaagaaacctgcaactatat 164
            |||||||| || ||||| || || || ||||| || |||||||| |||||||||||
Sbjct: 111 taggcgctccgacaaggtgtctgcatcaaaggtgcttcaagaaacttgcaactatat 167