Jatropha Genome Database

JcCB0393011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0393011.10 + phase: 0 
         (204 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002380 conserved hypothetical protein                          222   6e-58

>29729.m002380 conserved hypothetical protein
          Length = 1782

 Score =  222 bits (112), Expect = 6e-58
 Identities = 178/200 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgcaattgcactgtgatcatgggctgcaaggtttccagtggaacacaatttttggtttc 60
            |||||| |||| |||||||| ||||| |||  |||||  |||||| |||| |||||||||
Sbjct: 1579 atgcaactgcattgtgatcaggggctacaaaatttcctatggaacccaatgtttggtttc 1638

                                                                        
Query: 61   caacatcaagaaacatcagaaaattacactagaattgggaaagcagacagctctgagaga 120
            ||||| || |||||||||||||||||||| ||||| ||||||||||||||| |||| || 
Sbjct: 1639 caacagcaggaaacatcagaaaattacaccagaatcgggaaagcagacagcactgaaagg 1698

                                                                        
Query: 121  gaattagcagttagagcagctgcagcttccatctattcaacctgcagctttttgatgtca 180
            || |||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 1699 gagttagcagttagagctgctgcggcttccatctattcaacctgcagtcttttgatgtca 1758

                                
Query: 181  aaggagaatgtatcttgctt 200
            ||||||||||||||||||||
Sbjct: 1759 aaggagaatgtatcttgctt 1778