Jatropha Genome Database

JcCB0391751.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0391751.20 + phase: 1 /pseudo/partial
         (345 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014292 conserved hypothetical protein                          141   3e-33

>30170.m014292 conserved hypothetical protein
          Length = 630

 Score =  141 bits (71), Expect = 3e-33
 Identities = 184/221 (83%), Gaps = 3/221 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggattaatagcgcgagtggtcctttgaccacaaacattgcaagtgaaagcaacgcgc 60
           |||||||| ||||||||||| ||||||||||| ||||  || || || ||||| ||||||
Sbjct: 428 tggggattgatagcgcgagtcgtcctttgaccgcaaatgttacaggtaaaagccacgcgc 369

                                                                       
Query: 61  attctcctacgtggagattttgtgaagagagaccacggtaaggtcgaaaccttctccgta 120
           |||| ||||||||| ||||| || ||||||||||||||||| ||||| || |||||||||
Sbjct: 368 attcgcctacgtggcgatttagtaaagagagaccacggtaacgtcgatacgttctccgta 309

                                                                       
Query: 121 ttggatccttcgtcggcgccagcaggcaccggaggcccttccatgccggaaccagtagtc 180
           ||||| |   ||||||  || || || || | ||| ||||||||||||||||| || |||
Sbjct: 308 ttggaac---cgtcggtcccggcgggaacagaagggccttccatgccggaacctgttgtc 252

                                                    
Query: 181 cagcccctgacggaagcagcactcaaaaccaaccccatcgc 221
           ||||| || || ||||| || || |||||||| ||||||||
Sbjct: 251 cagcctctaacagaagcggcgcttaaaaccaagcccatcgc 211