Jatropha Genome Database

JcCB0388281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0388281.10 - phase: 0 /partial
         (345 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30198.m000878 cation-transporting atpase plant, putative              303   4e-82

>30198.m000878 cation-transporting atpase plant, putative
          Length = 3228

 Score =  303 bits (153), Expect = 4e-82
 Identities = 266/306 (86%)
 Strand = Plus / Plus

                                                                       
Query: 40  aaaggtgattttggaattgaacaagaccgactttcgacactcacaagggatcataagctt 99
           ||||||||||||||||||| ||||||   ||| || ||| | ||||| |||||||| |||
Sbjct: 334 aaaggtgattttggaattggacaagaaaaactatctacaataacaagagatcataaactt 393

                                                                       
Query: 100 gatgaactagagcgaattnnnnnnntaaaagggctttctgatctcttaaaaacaaataca 159
           |||||  | |||  ||||       |||||||||||||| |||| |||||||| |||| |
Sbjct: 394 gatgagttggaggaaattgggggggtaaaagggctttctaatctgttaaaaaccaatata 453

                                                                       
Query: 160 gagaagggaatccatggagatgatgctgatttactgaagcgcaagaatgcttttggatcg 219
           ||||||||| ||||||| ||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 454 gagaagggagtccatggtgatgatgctgatttacttaagcgcaaaaatgcatttggatca 513

                                                                       
Query: 220 aacacatatcctcagaaaaaaggaaggagtttctggatgttcctttgggaagcatggcaa 279
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 514 aacacgtatcctcagaaaaaaggaaggagtttctggatgttcctttgggaagcttggcaa 573

                                                                       
Query: 280 gatcttacattgatcatactgatggtggctgctgtggcttctttggcactgggtataaag 339
           |||||||| ||||||||| ||||||| |||||||||||||||||||  ||||||||||| 
Sbjct: 574 gatcttaccttgatcatattgatggttgctgctgtggcttctttggtgctgggtataaaa 633

                 
Query: 340 acagag 345
           ||||||
Sbjct: 634 acagag 639