Jatropha Genome Database

JcCB0386201.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0386201.10 - phase: 0 
         (657 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29634.m002088 ring finger protein, putative                           163   2e-39

>29634.m002088 ring finger protein, putative
          Length = 951

 Score =  163 bits (82), Expect = 2e-39
 Identities = 135/152 (88%), Gaps = 3/152 (1%)
 Strand = Plus / Plus

                                                                       
Query: 172 tctagaagaactcccttcactaatctcagtcaggtcgatgctgacctcgctcttgcacgt 231
           ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 169 tctagaagaaccccctttactaatctcagtcaggtcgatgctgacctcgcgcttgcccgt 228

                                                                       
Query: 232 accctccaagaacaggaaagggcatacatgatgttgagattcggcaa---tgaggggagt 288
           || ||||||||||||||||||||||| ||||||||||||||    ||   ||||||||||
Sbjct: 229 actctccaagaacaggaaagggcatatatgatgttgagatttaataatattgaggggagt 288

                                           
Query: 289 gattatggaagttgggaagctggaagctattt 320
           |||||||| |||||||| ||||  ||||||||
Sbjct: 289 gattatggtagttgggaggctgcgagctattt 320



 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                       
Query: 480 tgatcttgacccagccatgttttctagcgatgaggcctatgctagagccctacaagatgc 539
           ||||||||||||   ||||||||| || ||||| || |||||||||||| ||||||||||
Sbjct: 480 tgatcttgacccttgcatgttttccagtgatgaagcttatgctagagccttacaagatgc 539

                                                              
Query: 540 tgaagaaagggaaatggctgctagactcttggctcttgctggaataaatga 590
           ||||||| | |||||||||||| | || || ||| |||||||||| |||||
Sbjct: 540 tgaagaacgagaaatggctgctcgcctgttagcttttgctggaattaatga 590