Jatropha Genome Database
- JcCB0384321.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0384321.10 - phase: 2 /partial
(529 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29806.m000942 40S ribosomal protein S6, putative 436 e-122
29908.m006065 40S ribosomal protein S6, putative 244 4e-64
29772.m000314 40S ribosomal protein S6, putative 222 2e-57
>29806.m000942 40S ribosomal protein S6, putative
Length = 594
Score = 436 bits (220), Expect = e-122
Identities = 322/356 (90%)
Strand = Plus / Plus
Query: 26 atgggagggtgtgacaaacaaggatttcccatgaagcagggagttctcactcctggtcgt 85
|||||||| ||||| || |||||||||||||||||||| ||||| || || | ||||||
Sbjct: 1 atgggaggttgtgataagcaaggatttcccatgaagcaaggagtgctgacatcaggtcgt 60
Query: 86 gtccgtttgttgctacacagaggcaccccatgttttcgtggatatggaagacggaatggt 145
|||||| | ||||| |||||||| |||||||| || |||||||||||||| || |||||
Sbjct: 61 gtccgtctcttgcttcacagaggtaccccatgcttccgtggatatggaaggcgtaatgga 120
Query: 146 gagcgcaggagaaagtctgttcgcgggtgtattgttagtcaggacctttctgttttgaac 205
|||||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct: 121 gagcgcagaagaaagtctgttcgtgggtgcattgtgagtcaggatctttctgttttgaac 180
Query: 206 ttggttatagtgaagaagggtgaaaatgatttgcccggtttgactgacactgaaaaacct 265
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 181 ttggttatagtgaagaagggggaaaatgatttgcctggtttgactgacactgaaaaacca 240
Query: 266 aggatgagaggtccaaagagggcatccaagatccggaagctttttaacctttccaaggaa 325
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 241 aggatgagaggtccaaagagggcatccaagatcagaaagctttttaacctttccaaggag 300
Query: 326 gatgatgtccgcaaatatgtcaacacataccgtagaacctttacaacaaaatctgg 381
|||||||| ||||| ||||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 301 gatgatgttcgcaagtatgtgaacacataccgtagaaccttcacaacaaaaactgg 356
>29908.m006065 40S ribosomal protein S6, putative
Length = 750
Score = 244 bits (123), Expect = 4e-64
Identities = 309/371 (83%)
Strand = Plus / Plus
Query: 11 tatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaagcagggagtt 70
||||| ||||||||||||||||| |||||||| ||||| || || ||||||||||| ||
Sbjct: 142 tatgtattcaaaatcatgggaggttgtgacaagcaagggttcccaatgaagcagggtgtg 201
Query: 71 ctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttttcgtggatat 130
| || ||||| || |||||| | ||||| |||||||| || || || ||||||||||||
Sbjct: 202 ttgacccctggccgagtccgtctcttgcttcacagaggaacaccttgctttcgtggatat 261
Query: 131 ggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgttagtcaggac 190
||||| || ||||| ||||||||||| ||||| || || || || ||||| || || |||
Sbjct: 262 ggaaggcgcaatggagagcgcaggaggaagtccgtgcgtggatgcattgtcagccaagac 321
Query: 191 ctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcccggtttgact 250
||||||||||||||||| || || ||||||||||| || |||||| |||| ||| | |||
Sbjct: 322 ctttctgttttgaacttagtaatcgtgaagaagggagacaatgatctgcctggtcttact 381
Query: 251 gacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccggaagcttttt 310
|||||||||||||| || ||||||||||| ||||| || || ||||| || ||||| |||
Sbjct: 382 gacactgaaaaaccaagaatgagaggtcccaagagagcttcaaagattcgcaagctcttt 441
Query: 311 aacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtagaacctttaca 370
|| || || ||||| |||||||| ||||| ||||| ||||| ||||| ||| | || |||
Sbjct: 442 aatctatcaaaggaggatgatgttcgcaagtatgtgaacacttaccgcagatcattcaca 501
Query: 371 acaaaatctgg 381
|||||||||||
Sbjct: 502 acaaaatctgg 512
>29772.m000314 40S ribosomal protein S6, putative
Length = 744
Score = 222 bits (112), Expect = 2e-57
Identities = 316/384 (82%)
Strand = Plus / Plus
Query: 1 gttcaaagggtatgttttcaaaatcatgggagggtgtgacaaacaaggatttcccatgaa 60
|||||| || ||||| || || || |||||||| ||||||||||| || ||||| |||||
Sbjct: 132 gttcaagggttatgtatttaagattatgggaggctgtgacaaacagggttttccaatgaa 191
Query: 61 gcagggagttctcactcctggtcgtgtccgtttgttgctacacagaggcaccccatgttt 120
||| |||||||| ||||| || ||||| || | |||| |||||||| ||||| || ||
Sbjct: 192 gcaaggagttctaactccaggccgtgttcgacttctgcttcacagaggtaccccttgctt 251
Query: 121 tcgtggatatggaagacggaatggtgagcgcaggagaaagtctgttcgcgggtgtattgt 180
||||| |||||||| ||||||| || || || || ||||||||||| ||||| |||||
Sbjct: 252 ccgtggttatggaaggaggaatggagaacgtagaaggaagtctgttcgtgggtgcattgt 311
Query: 181 tagtcaggacctttctgttttgaacttggttatagtgaagaagggtgaaaatgatttgcc 240
|||||| || || || ||| |||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 312 tagtcaagatctctcagttctgaacttggttatagttaagaaaggtgaaaatgatctgcc 371
Query: 241 cggtttgactgacactgaaaaacctaggatgagaggtccaaagagggcatccaagatccg 300
|| |||| || ||| || ||||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 372 tggactgacagatgttgagaagcctagaatgaggggtcctaagagagcatcaaagatccg 431
Query: 301 gaagctttttaacctttccaaggaagatgatgtccgcaaatatgtcaacacataccgtag 360
||| || |||||||| || ||||| ||||||||||| |||||||||||||| || || |
Sbjct: 432 gaaactgtttaacctctcaaaggaggatgatgtccggaaatatgtcaacacttatcgccg 491
Query: 361 aacctttacaacaaaatctggtaa 384
||| |||||||| |||||||||||
Sbjct: 492 aacatttacaaccaaatctggtaa 515