Jatropha Genome Database

JcCB0383651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0383651.10 + phase: 0 /partial
         (205 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m002025 60S ribosomal protein L18a, putative                    168   8e-42
29989.m000434 60S ribosomal protein L18a, putative                     74   3e-13

>29693.m002025 60S ribosomal protein L18a, putative
          Length = 912

 Score =  168 bits (85), Expect = 8e-42
 Identities = 152/173 (87%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   tttcaccaataccaggttgttggaagagggttgcccactgagaatgatgagcatccaaaa 66
           |||||||| |||||||||||||| ||||| ||||| || |||  |||||| || || || 
Sbjct: 391 tttcaccagtaccaggttgttgggagaggattgccgacggaggctgatgaccaccccaag 450

                                                                       
Query: 67  atttatcggatgaagctgtgggccactaatgaggttagggccaagtccaagttctggtac 126
           ||||| |||||||||||||||||||| |||||| || |||| ||||||||||||||||||
Sbjct: 451 atttaccggatgaagctgtgggccaccaatgagtttcgggctaagtccaagttctggtac 510

                                                                
Query: 127 ttcttgaggaagctgaaaaaggt-aagaagagcaatggccaagtacttgctat 178
           ||| | ||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct: 511 ttccttaggaagctgaagaaggtgaagaagagcaatggccaagtccttgctat 563


>29989.m000434 60S ribosomal protein L18a, putative
          Length = 537

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 104/125 (83%), Gaps = 1/125 (0%)
 Strand = Plus / Plus

                                                                       
Query: 46  gagaatgatgagcatccaaaaatttatcggatgaagctgtgggccactaatgaggttagg 105
           ||||||||||| |||||||| ||||| || ||||| || |||  ||| ||||| ||| | 
Sbjct: 55  gagaatgatgaccatccaaagatttaccgtatgaaactctggagcaccaatgaagttcgt 114

                                                                       
Query: 106 gccaagtccaagttctggtacttcttgaggaagctgaaaaagg-taagaagagcaatggc 164
           ||||| || ||||||||||| ||||||||||| ||||| |||| ||| | ||||||||| 
Sbjct: 115 gccaaatcgaagttctggtatttcttgaggaaactgaagaaggttaaaaggagcaatggg 174

                
Query: 165 caagt 169
           |||||
Sbjct: 175 caagt 179