Jatropha Genome Database
- JcCB0380351.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0380351.10 + phase: 0 /pseudo/partial
(1342 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30147.m013975 Cyclic nucleotide-gated ion channel, putative 462 e-129
29822.m003360 Cyclic nucleotide-gated ion channel, putative 96 7e-19
29848.m004476 Cyclic nucleotide-gated ion channel, putative 86 6e-16
28863.m000090 Cyclic nucleotide-gated ion channel, putative 60 4e-08
>30147.m013975 Cyclic nucleotide-gated ion channel, putative
Length = 2043
Score = 462 bits (233), Expect = e-129
Identities = 590/709 (83%)
Strand = Plus / Plus
Query: 500 tagaagaatggaggattcggagaagagacactgaggaatggatgagccaccgtcaattac 559
||||||||||||||||||| ||| ||| || ||||| |||||||| || ||||||||||
Sbjct: 1103 tagaagaatggaggattcgacgaaaagatacagaggagtggatgaggcatcgtcaattac 1162
Query: 560 cactagaattgcaagaacgagttcgacgttttgtccagtataaatggatagccacaagag 619
| | |||| |||||||||| ||||| ||||| || ||||| |||||| | || |||||||
Sbjct: 1163 ctccagaactgcaagaacgtgttcgtcgtttcgttcagtacaaatggctggcaacaagag 1222
Query: 620 gtgtagatgaagaatctatcttgaaagctttacctttagacttgagacgccaaatccaaa 679
|||| ||||||||||||||| |||||||||||||||||||| || |||| | ||| ||||
Sbjct: 1223 gtgtggatgaagaatctatcctgaaagctttacctttagacctgcgacgacgaattcaaa 1282
Query: 680 gacatctttgtctggctcttgttcgacgagttccatttttcgcacaaatggatgatcagc 739
| ||||||||| | ||||||||| |||| || || || || |||||||||||||||||
Sbjct: 1283 ggcatctttgtttagctcttgttagacgggtccctttctttgcacaaatggatgatcaat 1342
Query: 740 tactggatgcaatatgcgaacgcctcgtttcgtctctaaacacaagagatacatatattg 799
|||| ||||||||||||||||| || ||||| || | ||||| ||||| ||||| ||||
Sbjct: 1343 tacttgatgcaatatgcgaacgtctggtttcatcattgaacactagagacacatacattg 1402
Query: 800 ttagagaaggagatccagtaaacgaaatgcttttcattattagaggacaattagaaagct 859
| || |||||||||||||| || || ||||||||||| || |||||| | |||| ||||
Sbjct: 1403 tgagggaaggagatccagtgaatgagatgcttttcatcatcagaggaaatctagagagct 1462
Query: 860 cgaccactaatggcggaaggtctggttttttcaactctattacattacggccaggtgatt 919
| || || ||||| |||||||| |||||||||||||||||||| | | |||||||||
Sbjct: 1463 ctacaacaaatggtggaaggtcaggttttttcaactctattacgctgagagcaggtgatt 1522
Query: 920 tctgtggtgaagagttattgacatgggcattaatgccaacatctcggttaaacctaccat 979
|||| || ||||| ||||||||||||||||| ||||| || ||||| |||||||| || |
Sbjct: 1523 tctgcggcgaagaattattgacatgggcattgatgccgacctctcgcttaaaccttcctt 1582
Query: 980 tatcaactcgaactgttaaagcactaagtgaagttgaggcctttgcacttagagcagaag 1039
||||||| |||| || || ||||| | |||||| ||||||||||| || ||||| ||||
Sbjct: 1583 catcaactagaacagtgaaggcactgactgaagtagaggcctttgctctcagagctgaag 1642
Query: 1040 atctaaaatttgtagctaaacaatttaaacgtttgcatagtaaaaagctgcaacatgctt 1099
| || || ||||| |||||||| || || ||||| || || || ||||||||||||||||
Sbjct: 1643 accttaagtttgttgctaaacagttcaagcgtttacacagcaagaagctgcaacatgctt 1702
Query: 1100 ttagatattactcgcatcaatggcggacttggggagcttgttatatacaaactgcatgga 1159
| || ||||| || ||||||||| | |||||||||||||| ||||||||||| || ||||
Sbjct: 1703 tcaggtattattcccatcaatggagaacttggggagcttgctatatacaaacagcctgga 1762
Query: 1160 gaaggttgaagagaaggaaactgcaattggaattagcaaggcaagagag 1208
| || | || |||||||||||| ||||||| ||||||||||||||
Sbjct: 1763 ggcggcatacaaggaggaaactgcaaatggaattggcaaggcaagagag 1811
Score = 216 bits (109), Expect = 3e-55
Identities = 283/341 (82%)
Strand = Plus / Plus
Query: 159 acacattctccttcttgtaaccctttgtttcttgattgtactacaagagataccccagaa 218
||||||||||| ||||||| || | ||||||| ||||||||||| | |||| ||| | |
Sbjct: 736 acacattctccatcttgtagccatgtgtttctggattgtactaccaaggataaccctgca 795
Query: 219 cgcgatgcttggcttagagttacccacttgctcactagttgcgatgctagaaatgatgaa 278
|||||||||||| ||||| || | |||| | || ||| ||||| | ||||||||||
Sbjct: 796 cgcgatgcttggtttagaaacactcgtctgcttattaattgtgatgccaaaaatgatgaa 855
Query: 279 catttccagtttggaatgtttgctgatgcctttattaatcatgttggtgaagcagatttc 338
|||| |||||||||||||| || |||||||||| ||||||||||| |||| || ||||
Sbjct: 856 aattttcagtttggaatgttcgccgatgcctttactaatcatgttgctgaatcacatttt 915
Query: 339 attgataaatatttctattgcctttggtggggcttaagaaatctaagttcatatgggcag 398
||| | ||||||||||| || ||||||||||| ||| |||| ||||||| ||||| ||
Sbjct: 916 attaacaaatatttctactgtctttggtggggtttacgaaacttaagttcctatggacaa 975
Query: 399 aatttgatggcaagtactcatgaaggtgaattattattcagtattggtatttgcattatg 458
|| |||||| |||||||| ||||||||||||| |||| || |||||||||||||| |||
Sbjct: 976 aacttgatgacaagtacttttgaaggtgaattactatttagcattggtatttgcatcatg 1035
Query: 459 ggtctagttttgtttgcacatctcataggaaatatgcagac 499
|||||| || |||||||||||||||| || || ||||||||
Sbjct: 1036 ggtctaattctgtttgcacatctcattggcaacatgcagac 1076
>29822.m003360 Cyclic nucleotide-gated ion channel, putative
Length = 1965
Score = 95.6 bits (48), Expect = 7e-19
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 671 aaatccaaagacatctttgtctggctcttgttcgacgagttccatttttcgcacaaatgg 730
||||||| ||||| | |||||||| |||||||| || || ||||| ||| |||||||||
Sbjct: 1160 aaatccagcgacatttatgtctggcccttgttcgccgtgtcccattcttctcacaaatgg 1219
Query: 731 atgatcagctactggatgcaatatgcgaacgcctcgtttc 770
|||| |||||||||||||| |||||||| |||||||||||
Sbjct: 1220 atgaccagctactggatgctatatgcgagcgcctcgtttc 1259
>29848.m004476 Cyclic nucleotide-gated ion channel, putative
Length = 1890
Score = 85.7 bits (43), Expect = 6e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 696 tcttgttcgacgagttccatttttcgcacaaatggatgatcagctactggatgcaatatg 755
|||||||||||||||||| |||||| |||| ||||||||||||||||| ||||| |||||
Sbjct: 1152 tcttgttcgacgagttccctttttctcacagatggatgatcagctacttgatgccatatg 1211
Query: 756 cga 758
|||
Sbjct: 1212 cga 1214
>28863.m000090 Cyclic nucleotide-gated ion channel, putative
Length = 969
Score = 60.0 bits (30), Expect = 4e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 696 tcttgttcgacgagttccatttttcgcacaaatggatgatcagctactggatgcaatatg 755
|||||||||||| || || || ||| |||| |||||||||||| | || |||||||||||
Sbjct: 234 tcttgttcgacgtgtccctttcttctcacagatggatgatcagttgcttgatgcaatatg 293
Query: 756 cgaacgcctcgtttcgtc 773
|| ||||| ||||||||
Sbjct: 294 tgagcgcctggtttcgtc 311
Score = 54.0 bits (27), Expect = 2e-06
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 1008 tgaagttgaggcctttgcacttagagcagaagatctaaaatttgtagctaaacaatttaa 1067
||||||||| || |||||| | ||||| ||||||||||| ||||| || || ||||| |
Sbjct: 546 tgaagttgaagcttttgcattgagagctgaagatctaaagtttgttgccaaccaattcag 605
Query: 1068 acgtttgcatagtaaaaagctgcaaca 1094
||| | ||||| ||||||||||||||
Sbjct: 606 acgcctccatagcaaaaagctgcaaca 632