Jatropha Genome Database

JcCB0376261.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0376261.10 + phase: 1 /partial
         (611 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27940.m000340 transcription factor, putative                          367   e-101

>27940.m000340 transcription factor, putative
          Length = 632

 Score =  367 bits (185), Expect = e-101
 Identities = 373/436 (85%), Gaps = 6/436 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaccaggtttcacacgaagtgtatataaaagcgaccatgctttaataacacctgaaa 60
           ||||||||||||||||||| || || || ||||| ||||||||||| |||||||||||||
Sbjct: 130 acttaccaggtttcacacgcagcgtttacaaaagagaccatgctttgataacacctgaaa 189

                                                                       
Query: 61  gtcatgtattcagtcctttacc------gacaaatactttaggagcatatctaatcacac 114
           ||||||| || ||||| |||||      ||||||||| |||||||||||||||||||| |
Sbjct: 190 gtcatgtgtttagtccgttacctgagtggacaaatacgttaggagcatatctaatcactc 249

                                                                       
Query: 115 cagcaatgggctctcactttgttatgtacctcgcaaagatgcaaggaaaatcaagatcag 174
           | || |||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 250 cggccatgggctcacactttgtgatgtacctagcaaagatgcaaggacaatcaagatcag 309

                                                                       
Query: 175 agctccctccttatgatgttgagaggttcatatttatggttcagggttctgcaactctga 234
             |  |||||| ||| ||| |||||||||||||| ||||||||||||| ||| ||||| |
Sbjct: 310 gacctcctcctcatggtgtagagaggttcatattcatggttcagggttatgctactctca 369

                                                                       
Query: 235 ctactgcttctagcaccagccatgaactgatggtggattcatatgcttatctacccccaa 294
           | | ||| ||| |   || | |  ||||||||||||||||||||||||||||||| ||||
Sbjct: 370 caaatgcatctgggttcatctacaaactgatggtggattcatatgcttatctacctccaa 429

                                                                       
Query: 295 atttcaaacattctttggagtgtgatgcatttgcgactcttgttgtctttgaacgcaggt 354
           |||   |||||||| ||||  ||||||||| ||| |||||||   ||||||| || ||||
Sbjct: 430 attctgaacattctgtggaaagtgatgcatctgctactcttgccatctttgagcggaggt 489

                                                                       
Query: 355 atgcttctctagacgatcttattactgaacagattgtgggttcaacagacaagcagccac 414
           |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 490 atgcttctctggacaatcttattacggaacagattgtgggttcaacagacaagcaaccac 549

                           
Query: 415 ttcttgagactccagg 430
           ||||||||||||||||
Sbjct: 550 ttcttgagactccagg 565