Jatropha Genome Database

JcCB0374611.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0374611.10 - phase: 1 /pseudo
         (344 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29970.m000990 chromatin binding protein, putative                     176   6e-44

>29970.m000990 chromatin binding protein, putative
          Length = 957

 Score =  176 bits (89), Expect = 6e-44
 Identities = 204/242 (84%), Gaps = 4/242 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   acttccacgatcaccgaatgtggatgaaatattgacaaagtacctggaatacaggtctaa 68
           ||||||||||||||| ||||| ||||| || |||||||| || || || |||||||| ||
Sbjct: 540 acttccacgatcaccaaatgtagatgatattttgacaaaatatcttgagtacaggtcaaa 599

                                                                       
Query: 69  aaaggatggcat----actgattcgataggagaaattttgaaagggatacgttgttactt 124
           |||||| |||||    || || || |||||||||||||||||||| ||||| || |||||
Sbjct: 600 aaaggacggcatgatgaccgactcaataggagaaattttgaaaggaatacgctgctactt 659

                                                                       
Query: 125 tgacaaggcattaccagtaatgcttctatacaagaaagagcggcaacaatattacagttc 184
           |||||| ||||||||||||||||| ||||||||||||||||| || || ||| |   | |
Sbjct: 660 tgacaaagcattaccagtaatgctcctatacaagaaagagcgccatcagtatgatgatgc 719

                                                                       
Query: 185 tgttgaaaatgacacgtctccatcaactatatacggtgctgaacatttgctgcgtctctt 244
           ||| ||||||||  | ||||||||||||||||| ||||||||||||||  |||| |||||
Sbjct: 720 tgtcgaaaatgatgcatctccatcaactatatatggtgctgaacatttattgcgcctctt 779

             
Query: 245 tg 246
           ||
Sbjct: 780 tg 781