Jatropha Genome Database

JcCB0368291.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0368291.20 - phase: 0 
         (255 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014289 tetracycline transporter, putative                      145   1e-34

>30170.m014289 tetracycline transporter, putative
          Length = 1329

 Score =  145 bits (73), Expect = 1e-34
 Identities = 142/165 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaaaaattgtcgggtttaagccatctgttcatgacattttttctgcataatttctca 60
           |||||||| ||||| |||||||||||||| || |||||  | ||||||||||| ||||| 
Sbjct: 1   atggaaaagttgtcaggtttaagccatctctttatgactatctttctgcataacttctcc 60

                                                                       
Query: 61  acgtatatggtggttcctgcaatcactgacgttacaatgtctgcaatttgtcctggaaga 120
           |||| ||||||| ||||||| ||||| |||||||| ||||||||  |||||||||| |||
Sbjct: 61  acgtttatggtgattcctgccatcaccgacgttacgatgtctgcgctttgtcctgggaga 120

                                                        
Query: 121 gatgaatgttcattagccatctacttgtctggattccaacaagcg 165
           |||||||| || ||||| ||||||||| | |||||||| ||||||
Sbjct: 121 gatgaatgctccttagctatctacttgaccggattccagcaagcg 165