Jatropha Genome Database

JcCB0367641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0367641.10 - phase: 0 /pseudo/partial
         (813 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003359 conserved hypothetical protein                          184   6e-46
30146.m003441 hypothetical protein                                     68   9e-11

>29794.m003359 conserved hypothetical protein
          Length = 2163

 Score =  184 bits (93), Expect = 6e-46
 Identities = 135/149 (90%)
 Strand = Plus / Plus

                                                                        
Query: 540  gtcattacaatttggaaatggagataaaagtgatgatgtctctgagacctccatggtgga 599
            |||| |||||||||||||||||||||||||||||||||| |||||||  || ||| ||||
Sbjct: 960  gtcagtacaatttggaaatggagataaaagtgatgatgtatctgagatatcaatgctgga 1019

                                                                        
Query: 600  ttctatatcagcattggatatttcgcctgatgaagttgtaggaataattggtcagaaaca 659
            |||| |||||||| | ||| |||| |||||||| |||||||||||||||||||| || ||
Sbjct: 1020 ttctgtatcagcactagatgtttctcctgatgatgttgtaggaataattggtcaaaagca 1079

                                         
Query: 660  tttctggaaagcaagaagggcaattgtca 688
            |||||||||||||||||||||||||||||
Sbjct: 1080 tttctggaaagcaagaagggcaattgtca 1108


>30146.m003441 hypothetical protein
          Length = 2352

 Score = 67.9 bits (34), Expect = 9e-11
 Identities = 88/106 (83%)
 Strand = Plus / Plus

                                                                        
Query: 572  atgatgtctctgagacctccatggtggattctatatcagcattggatatttcgcctgatg 631
            |||||| ||| || || ||| ||||||| ||  |||| || ||||| || ||||||||||
Sbjct: 1163 atgatggctcagaaacttccttggtggactccttatctgctttggaaatatcgcctgatg 1222

                                                          
Query: 632  aagttgtaggaataattggtcagaaacatttctggaaagcaagaag 677
            | |||||| ||||||| ||  ||||||| |||||||||||||||||
Sbjct: 1223 atgttgtaagaataataggcgagaaacaattctggaaagcaagaag 1268