Jatropha Genome Database

JcCB0365891.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0365891.10 + phase: 2 /pseudo/partial
         (463 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008984 conserved hypothetical protein                          139   2e-32

>30174.m008984 conserved hypothetical protein
          Length = 849

 Score =  139 bits (70), Expect = 2e-32
 Identities = 283/354 (79%), Gaps = 15/354 (4%)
 Strand = Plus / Plus

                                                                       
Query: 11  tttatggaatccatacatttagagttgaaagcatagcacgtggaaaagctgcaccagtag 70
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |
Sbjct: 437 tttatggaatccatacatttagagttgaaagtatagcacatggaaaagctgcacctgttg 496

                                                                       
Query: 71  atgaactacaagttcaagggtgttgttaaccctgcaactttgagga-------------a 117
           ||||||| ||||||||| |||||||||| |||| ||  | |||| |             |
Sbjct: 497 atgaactgcaagttcaa-ggtgttgttagcccttcacttctgagaaaggtcataataaca 555

                                                                       
Query: 118 gaggctgcaaaaaatatccaggatgctggaaaaggttggaaaagccgttgcacccacagg 177
           || |||||||| ||||| | ||||| ||||| ||||||| | | | | ||| | ||||||
Sbjct: 556 gaagctgcaaagaatatacgggatgatggaagaggttgg-agacctgctgctctcacagg 614

                                                                       
Query: 178 ggaaggggaaagcatgtccaggatggcatctttgagtgagggaccaactcttttcaaatc 237
           |||||| || || ||||| || |||| ||| ||| ||||||||||| ||  ||| |||||
Sbjct: 615 ggaaggagacagtatgtctagaatgggatcattgggtgagggaccagctgcttttaaatc 674

                                                                       
Query: 238 accaagcaagagctggaagatgacaggttctccacgctatgcatccatggagcctagaag 297
           ||||  ||| | ||||||| |||    ||||||||||||||||||  |||||||||||||
Sbjct: 675 accatccaaaacctggaaggtgatgaattctccacgctatgcatcattggagcctagaag 734

                                                                 
Query: 298 tccgataattggtgatgtggtgctaaataagattgaagaagtcagcagatcagt 351
           | | ||   |||||| ||| ||||||||||| ||||||||||||| | ||||||
Sbjct: 735 tgcaatccctggtgaagtgctgctaaataagcttgaagaagtcagtaaatcagt 788