Jatropha Genome Database

JcCB0365841.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0365841.10 - phase: 0 /pseudo
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-form...   321   2e-87
29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-form...    56   1e-07

>29848.m004649 Cellulose synthase A catalytic subunit 6
           [UDP-forming], putative
          Length = 3252

 Score =  321 bits (162), Expect = 2e-87
 Identities = 249/278 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaagcaagtgccggcatggtggccgggtcttaccggaggaatgagctggtccggatt 60
           |||||||||| ||| |||||||||||||| ||| ||||||| || ||  |||||||||| 
Sbjct: 1   atggaagcaactgctggcatggtggccggatctcaccggagaaacgaattggtccggatc 60

                                                                       
Query: 61  cgccacgattccgatagtgggcccaaacccctcaagaatttgaatggccaaacttgtcaa 120
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| 
Sbjct: 61  cgccacgattctgatagtgggcccaaacccctcaagaatctgaatggccaaacctgtcag 120

                                                                       
Query: 121 atctgtggtgataatgttggagttacagccagtggtgacacatttgttgcttgcaatgag 180
           |||||||||||||| || |||  |||||||||||||||||| ||||||||||||||||||
Sbjct: 121 atctgtggtgataacgtcggacatacagccagtggtgacacctttgttgcttgcaatgag 180

                                                                       
Query: 181 tgtgcttttccggtttgccgcccttgttatgagtacgagcggaaagatggtactcagtct 240
           ||||| || || |||||||| ||||||||||| || |||||||||||||| |||||||||
Sbjct: 181 tgtgccttcccagtttgccgtccttgttatgaatatgagcggaaagatgggactcagtct 240

                                                 
Query: 241 tgtccccagtgcaagactaggtacagaaggcacaaagg 278
           || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 241 tgcccccaatgcaaaactaggtacaggaggcacaaagg 278


>29761.m000416 Cellulose synthase A catalytic subunit 6
           [UDP-forming], putative
          Length = 2700

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 163 tttgttgcttgcaatgagtgtgcttttccggtttgccgcccttgttatgagtacgagcgg 222
           |||||||||||  |||  || || ||||| || ||||| || ||||||||||| ||  ||
Sbjct: 115 tttgttgcttgtcatgtttgcgcatttcctgtctgccgtccatgttatgagtatgaaagg 174

                                           
Query: 223 aaagatggtactcagtcttgtccccagtgcaa 254
           |||||||||| |||||||||||| || |||||
Sbjct: 175 aaagatggtaatcagtcttgtcctcaatgcaa 206