Jatropha Genome Database

JcCB0354231.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0354231.10 + phase: 0 /partial
         (435 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29713.m000179 conserved hypothetical protein                          254   4e-67
29942.m000761 conserved hypothetical protein                           52   3e-06

>29713.m000179 conserved hypothetical protein
          Length = 2250

 Score =  254 bits (128), Expect = 4e-67
 Identities = 185/204 (90%)
 Strand = Plus / Plus

                                                                        
Query: 232  catgttactaaggttattacctggaagcggacagcatcttcaaggtcatcttcttctaga 291
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct: 1174 catgttacaaaggttattacttggaagcggacagcatcttcaaggtcatcttcatcaaga 1233

                                                                        
Query: 292  aatccacttgccacagccgcaagagacgatgtgtctgacagtggtagtgattttgtagaa 351
            ||||| |||||||||||  ||||||| ||||| |||||||| |||||||||||| | |||
Sbjct: 1234 aatccgcttgccacagcaacaagagatgatgtctctgacagcggtagtgattttcttgaa 1293

                                                                        
Query: 352  gaattctgcatgattgctggaagtcattcctccacccttgataggctgtatgcatgggaa 411
            ||||||||||||||| |||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 1294 gaattctgcatgatttctggaagtcactcctctacactagataggctgtatgcatgggaa 1353

                                    
Query: 412  agaaaactatatgacgaagtaaag 435
            |||||||| ||||| |||||||||
Sbjct: 1354 agaaaactgtatgatgaagtaaag 1377



 Score =  228 bits (115), Expect = 2e-59
 Identities = 175/195 (89%)
 Strand = Plus / Plus

                                                                        
Query: 20   agaaagagaaagcagtgaccatgaaagatttatctgcagagagagaagatccttcagaat 79
            |||||||||||||||   ||||||||||| ||||||| || ||||||||||| ||||| |
Sbjct: 896  agaaagagaaagcagccgccatgaaagatatatctgctgaaagagaagatccatcagagt 955

                                                                        
Query: 80   tcattactcatagagcgaaggattttctttcaagtatcaaggatatagagcatcggtttt 139
            ||||||| |||||||| ||||||||||||||||| || |||||||||||  ||||||| |
Sbjct: 956  tcattacacatagagctaaggattttctttcaagcataaaggatatagaatatcggttct 1015

                                                                        
Query: 140  ttagagcttctgaatctggcaaggaggtttccaggatgcttgaagcaaacaatataaggg 199
            | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1016 tgagagcatctgaatctggcaaggaggtttccaggatgcttgaggcaaacaatataaggg 1075

                           
Query: 200  ttggatattctgaga 214
            |||| | ||||||||
Sbjct: 1076 ttgggttttctgaga 1090


>29942.m000761 conserved hypothetical protein
          Length = 2307

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                        
Query: 358  tgcatgattgctggaagtcattcctccacccttgataggctgtatgcatgggaaagaaaa 417
            ||||||||  |||| |||||| |||| ||| | |||||||| ||||||||||| || |||
Sbjct: 1321 tgcatgatctctggcagtcatgcctcaaccttagataggctatatgcatgggagaggaaa 1380

                              
Query: 418  ctatatgacgaagtaaag 435
            || || || |||||||||
Sbjct: 1381 ctttacgatgaagtaaag 1398