Jatropha Genome Database

JcCB0342441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0342441.10 + phase: 0 
         (1248 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014295 ornithine decarboxylase, putative                       186   2e-46
30170.m014294 arginine/diaminopimelate/ornithine decarboxylase, ...   115   7e-25
30170.m014293 arginine/diaminopimelate/ornithine decarboxylase, ...   100   4e-20
30170.m014298 ornithine decarboxylase, putative                        62   9e-09

>30170.m014295 ornithine decarboxylase, putative
          Length = 237

 Score =  186 bits (94), Expect = 2e-46
 Identities = 203/238 (85%), Gaps = 1/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 181 atggacaaatggactcgtgccctccccatggttcgtcccttctacgccgtcaagtgcaac 240
           |||||||| ||||||||| |||| |||||||||||||| || || |||||||| ||||||
Sbjct: 1   atggacaagtggactcgtacccttcccatggttcgtcctttatatgccgtcaaatgcaac 60

                                                                       
Query: 241 cccgaccgggctcttctaggcacacttgcgtctctcggctccaactttgattgtgcgagc 300
           ||||| | | |||   ||||||| || ||  |||| ||||||||||||||||| || |||
Sbjct: 61  cccgaaccgactccagtaggcactctagcaactctaggctccaactttgattgcgcaagc 120

                                                                       
Query: 301 cgggctgagattgaatccgttttatccctcggagtttcaccagaacgaatcgtttatgct 360
           ||||||||  ||||| || ||||||||||||||||||| || || || || |||||||| 
Sbjct: 121 cgggctgac-ttgaaaccattttatccctcggagtttcgcctgaccggattgtttatgca 179

                                                                     
Query: 361 aacccttgcaaagcagagtcccatatacaatacgctgctagcgtaggtgtcaatctaa 418
           ||||||||||||||||||||||||||  ||||||||||||| |  |||||||||||||
Sbjct: 180 aacccttgcaaagcagagtcccatattaaatacgctgctagtgctggtgtcaatctaa 237


>30170.m014294 arginine/diaminopimelate/ornithine decarboxylase,
           putative
          Length = 366

 Score =  115 bits (58), Expect = 7e-25
 Identities = 143/170 (84%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 460 tggcacccgctatgtggtttattgatccgaatcaaggctccggatgatggtggagctcgt 519
           ||||||||||  |||| |||||| ||||| ||||| ||||||| ||||| |||||| |||
Sbjct: 2   tggcacccgcactgtgctttattaatccggatcaaagctccgg-tgatgatggagcccgt 60

                                                                       
Query: 520 tgtccactggggcctaagtacggggcactcgctgaagaagtcaagcctcttctccaagct 579
           || ||| |||| |  |||||||| |||||  |||||||||||   |||||||||||||| 
Sbjct: 61  tgcccattgggcctcaagtacggtgcacttcctgaagaagtcgttcctcttctccaagcc 120

                                                             
Query: 580 gcccaagctgcacatctcaaagttgttggagtttctttccacataggaag 629
           || |||||||||   |||||||||||||| ||||| ||||||||||||||
Sbjct: 121 gctcaagctgcagggctcaaagttgttggcgtttcattccacataggaag 170


>30170.m014293 arginine/diaminopimelate/ornithine decarboxylase,
            putative
          Length = 294

 Score = 99.6 bits (50), Expect = 4e-20
 Identities = 233/294 (79%)
 Strand = Plus / Plus

                                                                        
Query: 955  atgaattgtctcttatacgatcatgcaacggtcacgtgcgcgcctctatcgtgcgcttcc 1014
            ||||| ||| |||| ||||||||||||||  | || ||| |||||||  | |||  ||||
Sbjct: 1    atgaactgtatcttgtacgatcatgcaactattacttgcacgcctctcgcttgcagttcc 60

                                                                        
Query: 1015 aatcgtggaaatcctacctgcaaagggttgaagagatacagctcaactgtttttggtccc 1074
            || |||| ||| ||||| |||||||| |||| || | | ||||| || ||||||||||| 
Sbjct: 61   aaccgtgcaaaccctacgtgcaaaggtttgaggacacatagctccaccgtttttggtccg 120

                                                                        
Query: 1075 acatgcgatgcgcttgacaccgtcttgaagggtcaccagttgccggaattgcagattaac 1134
            || || |||||||| ||||| || |||||||||||||  || |||||| | || || || 
Sbjct: 121  acttgtgatgcgctagacacagttttgaagggtcaccctttaccggaacttcacatcaat 180

                                                                        
Query: 1135 gattggctggtgttccccaatatgggagcttatacagtagctgctgggtccaacttcaat 1194
            || ||||| || || || || ||||| |||||||| | |||||||||||| ||||| |||
Sbjct: 181  gactggcttgtatttcctaacatgggggcttatactgcagctgctgggtcaaactttaat 240

                                                                  
Query: 1195 ggatttaagactggagcaattctcacatatcttgcttactccagttcaagctag 1248
            || ||| | ||   ||| ||| | |||||||||| |||||||| | ||||||||
Sbjct: 241  ggttttgacacgaaagctattttaacatatcttgtttactccaatccaagctag 294


>30170.m014298 ornithine decarboxylase, putative
          Length = 1251

 Score = 61.9 bits (31), Expect = 9e-09
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                      
Query: 389 aatacgctgctagcgtaggtgtcaatctaacaacttttgactc 431
           ||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 389 aatacgctgctagtgttggtgtcaatctaacaacatttgactc 431