Jatropha Genome Database
- JcCB0341981.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0341981.10 + phase: 0 /partial
(1044 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27538.m000327 Auxin response factor, putative 1146 0.0
30078.m002329 Auxin response factor, putative 109 3e-23
27494.m000045 Auxin response factor, putative 88 1e-16
>27538.m000327 Auxin response factor, putative
Length = 2130
Score = 1146 bits (578), Expect = 0.0
Identities = 927/1043 (88%), Gaps = 9/1043 (0%)
Strand = Plus / Plus
Query: 4 acatgggatgaaccagatttactacaaaatgtaaaacgcgtcagcccttggttggttgaa 63
||||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||||
Sbjct: 1084 acatgggatgagccagatttgctgcaaaatgtaaaacgtgtcagcccatggttggttgaa 1143
Query: 64 ttggtttcaaatatgccagtaatccacctatcacccttttcaccgccaagaaagaagttg 123
||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||
Sbjct: 1144 ttggtatcaaatatgccagtcatccacctgtcacccttctcacctccaagaaagaagttg 1203
Query: 124 cgggtcccgcaacacttcgactttccccttgacggccaattacaatggcagtcattttca 183
||| ||||||||||||| ||||| ||||||||||||||||| |||| || ||| ||||||
Sbjct: 1204 cggctcccgcaacacttagacttcccccttgacggccaatttcaattgccgtctttttca 1263
Query: 184 ggcaacccccttgggcctagcagccccttgtgttgtctatctgataacactcctgcaggc 243
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1264 ggcaacccccttggccctagcagccctttgtgttgtctatctgataacactcctgcaggc 1323
Query: 244 atacagggagccaggcatgctcaatttggaatatctttatcagatctccaacttaacaac 303
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||
Sbjct: 1324 atacagggagccaggcatgcgcaatttgggatatctttatcagatctccagctt---aac 1380
Query: 304 aaactgcagtcagggatgtttttatccagtctccagcggttcaattcacattctagaatt 363
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct: 1381 aaactgcagtcagggctgtttttgtccagtctccagcggttcaactcacattctagagtt 1440
Query: 364 tctgaaagtttcgtgaaaggccaaactaacagcaatgagaatatatcttgcttgttgaca 423
|||||||||||| ||||| || | || ||||||||||||||| |||||||||| ||||||
Sbjct: 1441 tctgaaagtttcatgaaaagcaacacaaacagcaatgagaatttatcttgcttattgaca 1500
Query: 424 atggggaactctaacacaaattcagataaatcagataatgtgaagaggcaccaatttcta 483
||||||||||| || ||||||||||| ||||| |||||||| || ||||| |||||| ||
Sbjct: 1501 atggggaactccaatacaaattcagagaaatctgataatgtaaaaaggcatcaatttgta 1560
Query: 484 ctctttggtcaaccgatactcactgagcagcagatttcttgtagctgttccactgatgca 543
|||||||||||||| ||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct: 1561 ctctttggtcaaccaatactaactgagcagcagatttctcgtagctgttctactgatgca 1620
Query: 544 gtatcacaagttattactgggaaaacttattctgatgagagtccagaaaaggcaaaaatt 603
|| || |||||| ||| | |||| || |||||||||||||||||||| |||||||||
Sbjct: 1621 gtctcgcaagttcttagtaagaaactttcatctgatgagagtccagaaaaagcaaaaatt 1680
Query: 604 catgatgttttaggatctgcaccagagaaacaaacttcaccggaaaaaacggccagtact 663
|||||||||||||||||| |||| ||||||||||||||||| ||||| | |||||||||
Sbjct: 1681 catgatgttttaggatctacacctgagaaacaaacttcaccagaaaagtcagccagtact 1740
Query: 664 gggttctcatggcagag------ttctactgaaactggcttagatgctggtcactgcaag 717
|| || ||||||||||| | | |||||||||||||| ||||||||||| ||||||
Sbjct: 1741 ggcttatcatggcagagtcttcataccactgaaactggcttggatgctggtcattgcaag 1800
Query: 718 gttttcttggaatcagaggatgtgggtcggacccttgacctatctgttctcagttcctat 777
||||||||||||||||| || ||||||||||| ||||||||||||||||| |||| |||
Sbjct: 1801 gttttcttggaatcagaagacgtgggtcggacgcttgacctatctgttcttggttcttat 1860
Query: 778 gaagagctgcacagtaagctggctaacatgtttggaatagaaagatcagagatgttgagc 837
||||||||| | |||| ||| || ||||||||||||||||||||||||||||||||| |
Sbjct: 1861 gaagagctgtatagtaggctagccaacatgtttggaatagaaagatcagagatgttgcac 1920
Query: 838 catgtgctctaccgagatgcaaaaggtgctgttaaacagactggagaagaaccattcagt 897
|||||||| || || |||||| ||||||| ||| |||||||||||| ||||||||||||
Sbjct: 1921 catgtgctatatcgggatgcagcaggtgctattagacagactggagatgaaccattcagt 1980
Query: 898 gtcttcacaaaaactgcaagaagattgacaattctgatgaatccagctggcagtgacaac 957
|||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 1981 gtcttcgcaaaaactgcaaaaaggttgacaattctgatgaatccagctagcagtgataat 2040
Query: 958 aatggaaggccatgggtcactgggatgcgaagggccgaaaatggtctagaggcttcaaat 1017
| ||||||||||||| ||| |||||||| || | ||||||||||||||||| ||||||
Sbjct: 2041 attggaaggccatggatcagagggatgcggagtactgaaaatggtctagaggcatcaaat 2100
Query: 1018 aagactggtcccttgagcatatt 1040
||| ||| ||||||||||||||
Sbjct: 2101 aaggctgaccccttgagcatatt 2123
>30078.m002329 Auxin response factor, putative
Length = 2109
Score = 109 bits (55), Expect = 3e-23
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 178 ttttcaggcaacccccttgggcctagcagccccttgtgttgtctatctgataacactcct 237
||||| ||||||| ||||||||||| |||||| || |||||||| | ||||||||||||
Sbjct: 1297 ttttccggcaacctccttgggcctaccagcccttttggttgtctaccagataacactcct 1356
Query: 238 gcaggcatacagggagccaggcatgctcaatttggaatatctttatcagatctcc 292
|| ||||| |||||||||||||||||||| | ||| || |||||||||||||||
Sbjct: 1357 gctggcatgcagggagccaggcatgctcattatggtctacctttatcagatctcc 1411
Score = 54.0 bits (27), Expect = 2e-06
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 704 ctggtcactgcaaggttttcttggaatcagaggatgtgggtcggacccttgacct 758
||||||| ||||| || ||| ||||||||||||||||||| || || ||||||||
Sbjct: 1847 ctggtcattgcaaagtcttcatggaatcagaggatgtgggccgaactcttgacct 1901
>27494.m000045 Auxin response factor, putative
Length = 1773
Score = 87.7 bits (44), Expect = 1e-16
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 226 gataacactcctgcaggcatacagggagccaggcatgctcaatttggaatatctttatca 285
||||||| | ||||| |||||||||||||||||||||||||||||||| |||||| | ||
Sbjct: 1321 gataacattactgcacgcatacagggagccaggcatgctcaatttggactatcttcagca 1380
Query: 286 gatctcca 293
||||||||
Sbjct: 1381 gatctcca 1388
Score = 67.9 bits (34), Expect = 1e-10
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 704 ctggtcactgcaaggttttcttggaatcagaggatgtgggtcggacccttgacctatctg 763
||||||| |||||||| ||| |||||||||| ||||||||||| ||||| ||| |||| |
Sbjct: 1511 ctggtcattgcaaggtcttcatggaatcagaagatgtgggtcgaaccctagacttatcag 1570
Query: 764 ttctcagttcctatgaagagct 785
| || |||| |||||||||||
Sbjct: 1571 tccttggttcatatgaagagct 1592