Jatropha Genome Database

JcCB0341321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0341321.10 + phase: 2 /partial
         (643 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28966.m000548 conserved hypothetical protein                          123   1e-27

>28966.m000548 conserved hypothetical protein
          Length = 1341

 Score =  123 bits (62), Expect = 1e-27
 Identities = 134/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 38  tatgatattgagagaaatgaatggagaattttgccaaatatgattgaagacagagatgaa 97
           |||||| |||| ||| |||| ||||||||  ||||  ||||||||||||| || ||||||
Sbjct: 691 tatgatgttgatagagatgagtggagaatgctgcctgatatgattgaagagagggatgaa 750

                                                                       
Query: 98  tgtcatggaatggcttttgaaggtgataataggttctgggttgtgagtggttatgggact 157
           ||||| ||  ||||||  || ||||||  || |||||||||||||||||||||||| |||
Sbjct: 751 tgtcaagggctggcttgggatggtgattctaagttctgggttgtgagtggttatggtact 810

                                                 
Query: 158 gatagccaaggacaatttaggtctgatgcagagtgtta 195
           ||||| ||||| || |||||||||||||| ||||||||
Sbjct: 811 gatagtcaaggtcagtttaggtctgatgctgagtgtta 848



 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 108/130 (83%)
 Strand = Plus / Plus

                                                                        
Query: 500  tcatcattttcatgtagtgaatgtgattttgaaggaacatttatcttggataaagattgt 559
            |||||| | |||||||| |||||||||| ||||||  |||| || ||||||| |||||| 
Sbjct: 1195 tcatcactgtcatgtagcgaatgtgattgtgaaggggcattcattttggatagagattgc 1254

                                                                        
Query: 560  aacaatggtaggactaaatggaaccatgtgcatactcctgctgagttctctggatttcca 619
            || ||||| || || |||||||||||||| ||||| ||||  |  || ||||||||||||
Sbjct: 1255 aataatggcagtaccaaatggaaccatgtccatacacctgtaggattttctggatttcca 1314

                      
Query: 620  ttctcagctt 629
            ||||| ||||
Sbjct: 1315 ttctctgctt 1324