Jatropha Genome Database

JcCB0340981.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0340981.10 + phase: 0 /pseudo/partial
         (483 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28629.m000553 abc transporter, putative                               436   e-122

>28629.m000553 abc transporter, putative
          Length = 1953

 Score =  436 bits (220), Expect = e-122
 Identities = 322/356 (90%)
 Strand = Plus / Plus

                                                                        
Query: 64   gatctgatgactgaaatagacatggagaaggttgagatggcagcaagaactgcaaatgct 123
            ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 1528 gatctgatgacggaaatagacatggagaaggttgaaatggcagcaaaaactgcaaatgct 1587

                                                                        
Query: 124  gacgaatttattagaaagctccctaaagggtacaaaacaaatattggaccaaggggctca 183
            || ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 1588 gatgaatttattagaaagcttccaaaagggtataaaacaaatattggaccaaggggctca 1647

                                                                        
Query: 184  agtttaagtggaggccagagacaaagactagctattgcaagggcactgtatcaagattct 243
            |||||||||||||| ||||  |||||||||||||| || ||||| |||||||||||||||
Sbjct: 1648 agtttaagtggagggcagaagcaaagactagctatcgctagggcgctgtatcaagattct 1707

                                                                        
Query: 244  tctatattgattttggatgaagcaacttctgctctagatagcaggtctgagttattggtg 303
            |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1708 tctatattgattttagatgaagcaacttccgctctagatagcaggtctgagttattggtg 1767

                                                                        
Query: 304  agacaagctgtgcaacgtttaatggaaaaccatactgttcttgtcattgctcaccggttg 363
            || |||||  ||||||| ||||||||||| ||||||||  |  |||||||||||||| ||
Sbjct: 1768 aggcaagcactgcaacgcttaatggaaaatcatactgtgataatcattgctcaccggctg 1827

                                                                    
Query: 364  gaaacagttatgatggctaagcggatattcattttaaacgatggaaaacttgaaga 419
            ||||||||| |||||||||| ||  |||||  |||| |  ||||||||||||||||
Sbjct: 1828 gaaacagttttgatggctaaacgagtattctctttagagaatggaaaacttgaaga 1883