Jatropha Genome Database

JcCB0340941.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0340941.20 - phase: 1 /partial
         (476 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29933.m001427 TRANSPORT INHIBITOR RESPONSE 1 protein, putative        539   e-153

>29933.m001427 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
          Length = 1770

 Score =  539 bits (272), Expect = e-153
 Identities = 426/476 (89%), Gaps = 1/476 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaatgaacccatggatgaggtctttcggtgcagttgtgaagacttgcaataaacttcaga 60
            |||| |||| |||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct: 1293 aaataaaccaatggatgagg-cttttggtgcagttgtgaagacttgcactaaacttcaga 1351

                                                                        
Query: 61   gactttcagtttcaggtctcttgacagacctgacattcgagtatattgggaggtatgcaa 120
            | ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
Sbjct: 1352 ggctttcagtttcaggtctcttgactgacctgacattcgagtatattggcagatatgcca 1411

                                                                        
Query: 121  aaaatttggaaactctttccgtagcttttgctggcagcagcgactgggggatgcagtgtg 180
            ||||||||||||||||||| || |||||||||||||| || |||||||||||||| || |
Sbjct: 1412 aaaatttggaaactctttctgttgcttttgctggcagtagtgactgggggatgcaatgcg 1471

                                                                        
Query: 181  tactaggaggttgtccaaagttgagaaaacttgagataagggattgcccatttggaaatg 240
            |  | ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1472 tgttgggaggctgtccaaaattgaggaaacttgagataagggattgcccatttggaaatg 1531

                                                                        
Query: 241  cagctcttctctcaggtttagagaagtatgaatctatgaggtcactttggatgtcatcct 300
            |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1532 cagcacttctctcaggtttggagaagtatgaatctatgaggtcactttggatgtcatcgt 1591

                                                                        
Query: 301  gcaaagtgacaatgaatggctgtcggctattggcaagggaaatgcctagattgaatgtgg 360
            |||| || || |||||||||||  |||||||||| ||||| |||||  || |||||||||
Sbjct: 1592 gcaatgttacgatgaatggctgcaggctattggccagggagatgccacgactgaatgtgg 1651

                                                                        
Query: 361  aggtaatgaaggaagaatggagcgatgacagtcaggctgataaagtttacgtttaccgtt 420
            |||| |||||||| ||  | |||||||||||||| || ||||||||||| |||||||| |
Sbjct: 1652 aggtgatgaaggaggatggcagcgatgacagtcaagccgataaagtttatgtttaccgct 1711

                                                                    
Query: 421  ctgttgccggaccaagaagagatgcccctccttctgtcctcactctttcaggttta 476
            ||||||| ||||||||||||||||||||  |  ||||||||| |||||||||||||
Sbjct: 1712 ctgttgcaggaccaagaagagatgccccatcgactgtcctcaatctttcaggttta 1767