Jatropha Genome Database

JcCB0339681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0339681.10 + phase: 0 /partial
         (540 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30006.m000282 DNA binding protein, putative                           274   5e-73

>30006.m000282 DNA binding protein, putative
          Length = 1323

 Score =  274 bits (138), Expect = 5e-73
 Identities = 356/427 (83%), Gaps = 10/427 (2%)
 Strand = Plus / Plus

                                                                       
Query: 54  actgattatacaagagaccttgaagaaatgcagaatgtgtcaagggaggaacacctggca 113
           ||||||||||  ||||| ||||| ||||||||||||||||| || |||||| |||| |||
Sbjct: 394 actgattatagtagagatcttgaggaaatgcagaatgtgtctagagaggaatacctagca 453

                                                                       
Query: 114 tctctttggagaaagagtagtggcttttcaagaggaaatctctaaataccatggactttc 173
           |||||| | || ||||||||||| || || ||||||| | ||||||||||  ||||||||
Sbjct: 454 tctcttcgtaggaagagtagtgggttctctagaggaa-tatctaaataccggggactttc 512

                                                                       
Query: 174 aagtcagtgggactcatcatttagtcgtatgcccggatctgaatatttcattagcataaa 233
            || |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct: 513 tagccagtgggactcatcatttggtcgtatgcctggatctgaatatttcagtagcataaa 572

                                                                       
Query: 234 ttatggtgcagctgatgacctagcattagagaatgattatgttgggagtctttgtttcga 293
           |||||||||||||||||| | ||||  ||| |  || |||||||| ||||||||||| ||
Sbjct: 573 ttatggtgcagctgatgatccagcagcagaaagcgaatatgttggcagtctttgttttga 632

                                                                       
Query: 294 gagaaaaattgatctaacaagttatatcaaatggtgggggtcgaacgaaactcgtcaagc 353
            || ||||||||||||||||||||||||| |||||||||||  ||| ||||||||     
Sbjct: 633 aaggaaaattgatctaacaagttatatcagatggtgggggttcaacaaaactcgt----- 687

                                                                       
Query: 354 agaatccatctcaaagtcatctgaagaggcgaagcatggttatgccgaagatgttggtga 413
            |||||  |||| || ||||| || ||    || ||||||||||  |||||| |  ||||
Sbjct: 688 -gaatctgtctccaaatcatcagatgaaagaaaacatggttatggtgaagatatcagtga 746

                                                                       
Query: 414 acttaaaacttcagaatgggcagtccagcctactgag---taccagatgccctgtttggg 470
            |||||| | |||||||||||||| ||| ||||||||   |||||||||||| || ||||
Sbjct: 747 gcttaaatcatcagaatgggcagtgcagtctactgagccttaccagatgccccgtctggg 806

                  
Query: 471 catgcct 477
           |||||||
Sbjct: 807 catgcct 813